Gluconobacter frateurii: MKW11_00310
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Entry
MKW11_00310 CDS
T08020
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gfa
Gluconobacter frateurii
Pathway
gfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MKW11_00310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfa03400
]
MKW11_00310 (mfd)
Enzymes [BR:
gfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MKW11_00310 (mfd)
DNA repair and recombination proteins [BR:
gfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MKW11_00310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
Cas3-like_C_2
RecG_dom3_C
UB2H
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UMM08568
LinkDB
All DBs
Position
complement(64416..67916)
Genome browser
AA seq
1166 aa
AA seq
DB search
MEQNETMTREMPLASFGPTVWGVPDGSVALLLRQRLSEHDGSLLHVARDDAAVASLADML
AYLMPEVEVLRLPAWDCLPYDRVSPNSVIVAERVGTLCRLLEPSKARRIVLTTVHSLLQR
VPPRSAFKGQSISVATGEMLDQSMLIEVLVANGYTRTDTVMEAGEFATRGGIFDLFPSGA
PDPIRLDLFGDEVENIRAFDVGTQRSTEKLARFELRPVSEFSLGPDSISRFRTGWRDTFG
PTAASDTIYENVSDGRRYPGLEHYLPLFHDGDGHQMETLLDYLPDAAVSFDSHAPDILKA
RLDMIADHYEARRVPVREGEMPYRALPPHRLYLDRHGWEAMLSRTPSVLLNAFAKPDLGA
GIDAGNRPGPIFARAKDGSRDGVFEAFGKQVEDWAKSGRRTYVTAWSRGSRERIAHLLQE
HGLTTESHDDWPSAAGVSRGTVGLLVLGVERGFVSDRLCFVSEQDLLGERISRPPRRKKR
GEQFISQVGEIAEGDLVVHQDYGIGRYVGLQTIREGLVAHDYLSIFYDGEQRLLLPVENI
ELLSRFGSEQASVQLDKLGGTAWQARKAKMKSRIRVMAGELIRTAAARAMREAPTLAPAE
GLWDEFCARFPFVETEDQSRAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAL
SGMQVAVVVPTTLLARQHYRGFVARFEGLPVRIAQLSRMVTPKEATKVREEMADGRLDIV
VGTHALLAKTVSFNRLGLLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLSL
SGVREMSLIATPPTDRLAVRTFITPFDSVMIREAILRERFRGGQVFCVLPRLADLDRMAD
RLSEIVPDAKVVQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHR
ADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTNSLSAASEKRLEIMQTLDSLGAGFTLAS
HDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVLDLRRERGRKAEEDESWTPNIILG
LPVLIPETYVADLPVRLGLYRRIASLNGEAEVEAMRAELVDRFGSLPQEVGNLLDVVLIK
RLCREAGVERLEAGPKGMVLQFRKNRFSNPAGLIDWATRKKDSGVKIRPDHKLAVIREMT
NATRIGFAKKVTTVLCKLVRKVEDAD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacgaaaccatgacccgtgaaatgcccctcgcatcctttggtccaaccgtc
tggggcgtaccagatggcagtgtagctcttctgctacgccagcgattgtctgaacatgac
ggatcgcttttacacgttgcccgggacgatgccgctgtggcttcgctggcggacatgctg
gcctatctgatgcccgaagtcgaagtcctgcgcctgcctgcctgggactgtctgccttat
gaccgtgtctctccaaattccgtgattgtagcggagcgtgttggaacgctctgccgtctg
ctggaaccgagcaaggctcgccggatcgtgctgacgaccgtccacagccttttgcagcgc
gtccccccgcgttcagccttcaaaggacagtccatcagcgtggcaaccggcgaaatgctg
gatcagtccatgttgatcgaagttttggtcgccaatggctacacccggaccgataccgtc
atggaagccggtgaatttgcaacccgtggcggaattttcgatctgttcccgtcgggtgcg
ccggacccgatccgtctcgatctgtttggcgatgaagtcgaaaatattcgtgcttttgac
gtcgggacgcagcgttcaactgaaaagctggcccgcttcgaattgcgccccgtttccgaa
ttttcgctgggcccggacagcatcagtcgcttccggacaggctggcgtgacacgttcggc
ccgactgccgcgtcggacacgatttacgaaaacgtttcggatggtcgccgctatccgggc
ttggaacactatctgccgctgttccacgatggtgacggccatcagatggaaacgcttctg
gattatcttcctgatgcagccgtcagctttgacagtcacgctccggatatcctgaaagcc
cggctggacatgattgcggaccattacgaggctcgccgtgtgcccgttcgggaaggggaa
atgccctatcgcgcgcttcccccgcatcgcctgtatctggaccggcacggttgggaggcg
atgctgtctcgcacgccatccgtgctgctcaatgcctttgccaagcccgatcttggtgcc
ggaattgatgcgggtaatcgtccggggccaatcttcgcgcgggccaaggacgggtcgcgt
gatggcgtgttcgaagcgttcggaaaacaggtggaagactgggcaaagtctggccgacgc
acctatgtcacggcctggagccgtgggtcgcgggagcggattgcccatctgcttcaggaa
catggcctgaccacggaaagccatgatgactggccctccgctgctggcgtgtctcgtggc
accgttggtctgctggtgcttggagtggagcgcggctttgtttcggatcggctgtgtttc
gtctctgaacaggatcttctgggtgagcggatttcccgtccgccccgccgcaagaagcgt
ggcgagcagttcatttctcaggttggggaaatcgcggaaggcgatctggtcgtccatcag
gactatggcatcgggcgctatgtgggtttgcagaccatccgcgaaggtctggtagcccat
gactacctctccattttctatgatggagagcagcggcttcttctgccggttgagaatatc
gagcttctgagccgattcggttctgagcaggccagtgttcagctcgacaagctgggcggc
acggcctggcaggcccgtaaggccaagatgaaatcccgcatccgcgtcatggcgggtgaa
ctgattcggaccgctgcggcacgggcgatgcgtgaagcaccgacgctggcgcccgctgaa
ggcttgtgggacgaattctgtgcgcgtttcccgttcgtggagacggaagatcagtcccgc
gccattgcggatgttctggaagatatgagttccgggcgaccgatggaccgtctggtttgc
ggcgacgttggtttcggcaagacggaagtggcgctgcgtgcggccttcgtggccgcacta
tcggggatgcaggtggccgttgtcgtcccaacgacgttgctggcgcgtcagcattaccgg
ggttttgtcgcgcgatttgaaggactgccagtccggattgctcagttgtcgcgtatggtg
acacccaaggaagcgacgaaggtgcgtgaagagatggcagatggccgtcttgatatcgtc
gtaggcacgcacgcgcttctggccaagacggtgtcgttcaatcgccttggtctgctcatt
atcgatgaagagcagcattttggtgtggctcataaggagaagctcaaggctctgcgtgaa
gacgtgcatgtcctgacgctgtccgccacgccattgcctcgcacgcttcagctttccttg
tccggcgtgcgtgagatgagcctgattgctacgccaccgacggaccgtctggctgtccgc
acgtttatcacgccattcgatagcgtcatgatccgtgaggccattctgcgcgagcgtttc
aggggtgggcaggtcttctgcgtcctcccacgtcttgcggatctggaccggatggcagac
cgtctgtccgagatcgtgccagacgccaaggtcgtgcaggcgcatggccgcctgacgcct
acggaactcgaacgggtgatgaccgaattcgcggatgggaagtatgacatcctgctttcc
actaatatcgtggaaagcgggctcgatatgcctagcgtgaatacaattattatccaccgg
gctgacatgttcgggctagggcagctttaccagcttcgtgggcgcgtgggccgtggcaag
caacgtggttatgcgtatctgacctggccgcaaacgaactcgctctcggcggcttccgag
aagcgtctggaaatcatgcagacgctggattcgctgggtgcggggttcacgctggcatct
catgatctggatctgcgtggtgccggaaatctgttgggtgatgagcagtccggtcacatc
aaggaagttggtattgagctgtatcagcagatgctggaagacgcggttctggatctccgc
cgcgagcgggggcgcaaggccgaagaggatgaaagctggacacccaatatcattctgggt
ctgccggttctgattcctgaaacctatgttgctgatctgcctgttcgactggggctttat
cgccgtattgcatccctgaacggggaagcggaagtcgaagcgatgcgggctgaacttgtg
gatcgcttcggatctctgccgcaggaagtcggcaatctgctggacgtggtgctcatcaag
cgtctttgccgtgaagccggggtggaacgtctggaagctgggccgaaggggatggtgctt
cagttccgcaagaaccggttcagcaatcccgccgggctgatcgattgggcaacgcgcaag
aaggattcgggtgtgaagattcgcccggatcataagcttgccgtgatcagggaaatgacg
aacgcaacccggatcggctttgcaaagaaggtaacgaccgttctgtgcaaactggtgcga
aaggtggaagacgccgactga
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