Gluconobacter frateurii: MKW11_00455
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Entry
MKW11_00455 CDS
T08020
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gfa
Gluconobacter frateurii
Pathway
gfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKW11_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfa03019
]
MKW11_00455
Messenger RNA biogenesis [BR:
gfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKW11_00455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UMM08594
LinkDB
All DBs
Position
complement(99390..101048)
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AA seq
552 aa
AA seq
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MTDTPDGLSFLPLGGTGEIGMNFNLYRLTKNNKETWLAIDCGIGFSGNDTPEAEVLMPDP
TFIADRAKDLCGLVITHAHEDHLGAVAHLWPYLRCPVYATPFAAAVLRRKLHEAHLVNQV
KIHVVMPGSRFHVGPFDLQFVSVTHSVAEAQAVALRTPHGLIVHTGDWKLDENPLVGPKT
DLEEFGRLGDEGVLAMVGDSTNVMKEGRSESEADVRKGLTDLITSLQGRVAVTCFASNVA
RVESIAKAAMAAGRAVMIVGRSLRNLETAARECGYFSDLPPFLTEQDARDVHDDNLLMII
TGSQGEPRSALSRIASDTHPNISLGEGDTVIYSSRVIPGNEQAVMAVQDNLSRRGVTVLT
DKDAKVHTSGHATGDDIRVLYGIVRPKYSIPTHGEWRHLTAHAALAHEMGSEPILLEDGD
ILNLSPGEVKVVDTAPTGRLALDGGRLLPMTGGVLAARRKMLFNGMVIASFAVDDEGYVI
GEPKISAPGLLEAEDPESIRIQEEFADSIDEIPDELRQDDTAFRDAAKTALRRALGRKLQ
KRPLVDVHLLRV
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgacggatacacctgacggtttgtccttcctgcctctgggcgggacgggcgagatcggc
atgaatttcaatctttatcgcctcacaaaaaacaacaaggaaacctggctcgccatcgat
tgcggcattggcttctcgggtaatgatacgcctgaagccgaagttcttatgccagacccc
acgtttattgcggatcgggcaaaagacctctgcggccttgtcattacccatgctcatgaa
gatcaccttggggccgtagcgcacctgtggccgtatctgcgctgcccggtttatgccacg
ccatttgccgcagctgttctacgtcgtaagctgcatgaagctcatctggtcaatcaggtg
aagatccatgtcgtaatgccgggatcgcgctttcacgttgggccgttcgatcttcagttc
gtctcggtaacccactctgtcgccgaggcgcaggctgttgctctccggacgccgcatggt
ctcatcgtccacacgggtgactggaagcttgacgagaacccgctggtcggcccgaagacg
gatcttgaagaattcggtcgcctcggagacgagggcgttctggccatggtgggtgacagc
accaacgtcatgaaggaaggtcgctctgagtccgaagctgatgtccgcaaaggcctgacg
gatctgatcacaagccttcaggggcgtgtggctgtaacgtgctttgccagtaacgtggcg
cgtgttgagagcattgcgaaggctgccatggcggctggtcgtgcggtcatgatcgtcggc
cgttccttgcgcaatcttgaaacggctgcccgtgagtgcggttacttcagcgatctgcca
ccgttcctgacggagcaggatgcgcgtgacgtccatgatgacaatcttctgatgatcatc
acaggaagtcagggtgagcctcgatctgccctgtcccgtatcgcatccgatacccatcca
aacatttccctcggtgagggcgacacggttatttacagctcacgcgttattccggggaat
gaacaggctgtcatggccgtacaggacaacctgtcccgtcgtggcgtgactgttctgacg
gacaaggatgcaaaggtgcatacgtccggccatgcaacgggcgacgatattcgtgtcctg
tatggcatcgtccgaccgaaatacagcattccgacccatggtgaatggcgccatctgacg
gctcacgcggctctggcccatgaaatgggttctgaaccgatcctgctggaagatggcgat
atcctgaacctgtctccgggtgaggtgaaagttgtcgatacggcaccgactggtcgcctg
gcgctggatggtggccgtcttctgcccatgacgggtggcgttctggccgcacgtcgcaag
atgctcttcaacggcatggtcattgcgagcttcgctgtggatgatgaaggctatgtgatc
ggcgagccaaagatcagcgcacctggtctgcttgaggcggaagatccggaaagcattcgc
attcaggaagaattcgctgattccattgacgaaatcccggatgagctgcgacaggacgac
acggcattccgtgacgcagccaagacggccctgcgccgggcactggggcgcaagcttcag
aagcgtccgcttgtcgatgtccatctgctgcgcgtctaa
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