Geosporobacter ferrireducens: Gferi_00745
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Entry
Gferi_00745 CDS
T04493
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03030
DNA replication
gfe03430
Mismatch repair
gfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gferi_00745 (polC)
03430 Mismatch repair
Gferi_00745 (polC)
03440 Homologous recombination
Gferi_00745 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfe03032
]
Gferi_00745 (polC)
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_00745 (polC)
Enzymes [BR:
gfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Gferi_00745 (polC)
DNA replication proteins [BR:
gfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Gferi_00745 (polC)
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Gferi_00745 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
DNA_pol3_a_NII
RNase_H_2
DNA_pol3_a_NI
Rv2179c-like
HHH_3
DEDDh_C
Catalase_C
Motif
Other DBs
NCBI-ProteinID:
AOT72935
UniProt:
A0A1D8GPU7
LinkDB
All DBs
Position
complement(145499..149743)
Genome browser
AA seq
1414 aa
AA seq
DB search
MGDIFSEKPFNYNAMIEKVTYNRSNKILNVVLVSEEIIHKRYFDEIKEHMIKHIPFIRDI
SFLPRYYKLKDQNEVLQNYWENILYELNKKMPSAAAWITDAEISFESSKMVIIVKDSIGR
DNLLERKIDSFIREIYKIEFNKDIQVSIESTEVPDDEAQIRYHMEKERETQDLLKEILTA
TETQTPKKKNHISDPDKNIILGKKFQDYSIPIASISEESGIVVIEGEIFDIETRELKNGK
ILFTMSMTDYDSSIGAKIFAKKEQKDLLNETLHTGKYLRVKGDARYDTFSKEVVVMVNDI
MEGTPTVREDLSKVKRIELHAHTQMSAMDGVTSASNLIKRAAKWGHPAIAITDHGVVQAF
PEAMEAAKKHGIKVIYGIEGYLINDGETIAIGCKQETIHQRYVVFDIETTGLSSKHDKIT
EIGAVKIENGQIIDRFHTFVDPIIPIPENIVKLTGITDEMVKGQPTIDKILPEFLKFTEG
AVIVAHNAVFDVSFIKENCHLYGYSFDHPIVDTLPLAKVLLPKLKKYRLNVVAEALDVTL
KNHHRAVDDAEATAQIFLKFLNMAAEKGVHYLRDLNALFQNTIDIKKLDTFHIIILVKNA
TGLKNLYKIVSTSHLEYFYKKPRIPKSLLSKYREGLVIGTACEAGELYRSILNNRSQREI
ENIVKYYDYLEIQPLFNNKFLLDKGLVKDQKELIEINQRIVRLGEKYKKPVVATGDVHFL
DPKDEVYRRILMSGQGFDDADDQTPLYLRTTEEMLEEFAYLGKDKAMDVVVNHPNRIAEE
IDSLIPIPDETFPPIIEGSEEDLRKMCYEKATRIYGDPLPEVVQKRLDRELNSIINNGYA
VMYIIAQKLVTKSLRDGYLVGSRGSVGSSFVATMSDITEVNPLPPHYVCSHCKHSEFILD
GSIGSGADLPDKHCPGCSKELIKDGHDIPFEVFLGFEGDKEPDIDLNFAGEYQANAHKYT
EELFGTGYVFRAGTIGTIAEKTAYGFVKKYFDEKGIFVNNREISRLVKGCTGVKRTTGQH
PGGVMVVPNYKEIYDFCPIQYPANDGSSGVITTHFDYHSISGRLLKLDILGHDVPTIIRM
LQDLTGLEPTQIPLDDQETVKIFTSLEPLKIVYDDFECETGSLGIPEFGTKFVRQMLVDT
KPTTFAELVRISGLSHGTDVWLNNAQDLVRQGIAELKDVISTRDDIMNYLIYKGLPPKSA
FKIMENVRKGKGLNSADEEIMKQNNVPQWYINSCNKIKYMFPKAHAAAYVMMSFRIAYFK
VHYPLAFYATYFTTKASDFDAELVAKGREHVRDKIKELESLGNNASQKEKDLLTVLEVVH
EMYCRGFGFCKVDLYESDAERFKISGNNLLPPIRALQGVGENAARSICESRKEGEFISLQ
HLRESAKLTKTVIETLQTHGCLEGLPDTNQLSLF
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatattttttctgaaaagccttttaattataatgctatgatagaaaaggtaacc
tataatcggtcaaataagatattaaatgttgtactagtatctgaggaaataatacataag
cgttattttgatgaaattaaagaacacatgataaaacatatcccatttattcgggatata
agttttttgccgagatattataaattaaaagatcagaatgaggtattgcaaaactattgg
gagaatatcctctacgaattaaacaaaaaaatgccctcagcagcagcatggataactgat
gctgaaataagctttgaatcctcaaagatggtaatcatagttaaagacagtataggaagg
gataatttattagaaagaaaaatagatagctttataagagaaatttataaaatagagttt
aataaagacattcaagtttctatagaatcaacagaagtgccagatgatgaagcacagatt
aggtatcatatggaaaaagagagagagacccaggatcttctcaaggaaatacttactgct
acagaaacgcagacacctaagaaaaagaatcacatctcagatccggataaaaatattatc
ctaggtaagaaatttcaagattattctatacccattgcatctatatcagaagaatcaggt
atcgttgtgatagagggtgaaatctttgatatagagacaagggaattaaaaaatggaaaa
attctttttaccatgagtatgacagattatgatagttctatcggtgccaagatttttgca
aaaaaagaacagaaagatttgttaaatgaaaccttacatacaggcaaatatttacgggta
aagggagatgcacgctacgatactttctctaaagaagttgttgtaatggttaatgacatc
atggaaggcacaccaactgttcgtgaagatctttcaaaggtaaaaagaatagagcttcat
gcccatacacagatgagtgcaatggacggcgtcacatcagcgtccaacctaataaaaaga
gctgcaaaatggggccatcctgcaatcgccattacagatcatggtgtggttcaggctttt
cctgaagcaatggaagctgctaaaaagcatggtattaaagttatttatggtatcgaaggt
tatctgattaatgatggggaaacaattgctattggctgcaagcaagaaaccattcatcag
cgttacgtcgtatttgatattgaaacaactgggctttcgagcaagcatgataagattacg
gagattggagccgtcaaaattgaaaacgggcagattattgatcgttttcatacatttgta
gatcctattattccaatacctgaaaatattgtcaaactgactggtattactgatgaaatg
gtaaagggtcagcctaccatagataaaatattgccagaatttctaaagtttacggaaggc
gctgtgattgtggcgcataatgctgtctttgatgtttcttttattaaagaaaactgccat
ctgtatggttattcttttgatcatccaatagtagatacattgccactggcaaaggtatta
ttgcccaaactaaaaaaatatcgcttaaatgttgtcgcagaagcgttggatgtgacttta
aagaatcatcatagagcagtagatgatgcagaagctaccgctcaaatatttttgaaattt
cttaatatggcagcggagaaaggcgttcactacctgagagatttaaatgccttatttcaa
aatacgattgacattaaaaaactagatacctttcatattattattctggtaaaaaatgca
acaggtttgaagaacttatataagattgtatctacgtctcaccttgaatatttttataaa
aaaccacgtattccaaagtctcttcttagcaaataccgggaaggacttgtgattggcact
gcctgtgaagctggagaattatacagatccatattaaataaccgttcacagagagaaatt
gaaaacattgtaaaatattatgactatcttgagatacaaccgctttttaacaacaagttt
ttgctagataagggattggttaaggatcaaaaagaacttattgaaatcaatcaaaggatt
gtaaggcttggagaaaaatataagaaaccggttgtagcaacaggagatgttcattttctc
gatccaaaggatgaggtatatagaagaattctcatgagtggacaaggttttgatgatgca
gacgatcaaactcctttatatcttcgtacaactgaagaaatgcttgaggagtttgcttat
cttggaaaagacaaagccatggacgttgtggtgaatcatccaaatcgaattgcagaagaa
atcgattcgctcattccgattccggacgaaaccttccctccaattattgaaggatctgaa
gaagatttaagaaagatgtgttatgaaaaagcaacgagaatatatggggatcctttgccg
gaggttgttcaaaaaagattagacagagaactgaattctattattaataatggatatgcg
gttatgtatattattgcccaaaagctggtaaccaagtccctaagagacggatatctggtt
gggtccagaggttctgtagggtcatcctttgttgcaactatgagtgatattacggaagta
aaccctttgcctccccactatgtttgtagccactgcaagcattcagaatttatattggat
ggaagtattggcagtggtgcggatctgccggataagcattgtcctggttgcagcaaggag
cttattaaggatgggcatgatattccttttgaggttttcttggggtttgaaggagataaa
gagccggatattgacttgaactttgcaggagaatatcaggcaaatgcccacaaatatacg
gaggaattatttggtaccggctatgtttttagagctggaacgataggtacaattgctgaa
aaaacggcatatggtttcgtgaagaagtactttgatgaaaaaggaatatttgtaaacaac
cgggaaatctcacgattggtaaaaggatgcaccggtgtaaagcggactacggggcagcat
cccggaggggttatggttgttcccaactataaagaaatatatgatttctgtccgattcaa
tatccggccaatgatggttcttccggtgttattactacccatttcgattaccattccatc
agtggaaggctgctaaaacttgatattttaggacacgacgtgccaaccattattcgtatg
cttcaggatttgacaggactggagcctacgcaaattcccttggacgatcaagagacagta
aagatatttactagcctagagccattaaaaatagtatatgatgattttgaatgtgaaaca
ggaagtcttggaatacctgaatttgggacgaaatttgttcgtcaaatgcttgtagataca
aaaccaacaacgtttgcagagctcgtcagaatcagcggtctgtcccatggaacagatgtg
tggttgaataatgcacaagatctagtacgtcaagggattgcagaattaaaagatgttatt
tccacaagagatgatattatgaactatcttatttataaaggcttgccgccaaagagtgca
ttcaaaattatggagaatgtgagaaaaggtaaaggcctaaacagtgcagatgaagaaata
atgaaacagaacaatgtgccccagtggtatataaattcctgtaataagattaaatatatg
ttcccaaaagctcatgcagctgcctacgtaatgatgtcctttagaattgcatatttcaaa
gtacattaccccttagctttttatgctacctattttacaacaaaggcttctgattttgat
gcagaacttgtagcgaaaggcagagagcatgtacgagataaaattaaagaattagagagt
cttggaaacaatgcttcacaaaaagaaaaggatcttctgacagttctagaagttgttcat
gaaatgtattgcagaggttttggattttgtaaagtagatttatatgaatctgatgcagag
cggtttaaaatttcaggaaataatctgctgcctcccataagagcattacaaggagttggg
gaaaatgcagccagaagtatttgtgaaagtagaaaagaaggagaatttatttccttgcag
catttacgggaaagtgcaaagttaacaaaaaccgttatagagacacttcaaacacatgga
tgcctggaaggattaccagatacaaatcagctatcattattttag
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