Geosporobacter ferrireducens: Gferi_02125
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Entry
Gferi_02125 CDS
T04493
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gferi_02125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfe03019
]
Gferi_02125
03009 Ribosome biogenesis [BR:
gfe03009
]
Gferi_02125
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gferi_02125
Messenger RNA biogenesis [BR:
gfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gferi_02125
Ribosome biogenesis [BR:
gfe03009
]
Prokaryotic type
rRNA helicases
Gferi_02125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
MtrF
Motif
Other DBs
NCBI-ProteinID:
AOT68493
UniProt:
A0A1D8GC59
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All DBs
Position
complement(414470..416056)
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AA seq
528 aa
AA seq
DB search
MNNITFKQLGLMPEILKAIDALGYEEPTPIQKAAMPAVMDGKDIIGQAQTGTGKTAAFSM
PVIQKLSLDVKGPQALILTPTRELAVQVADEISKFSKYLSGVKTLAIYGGQPIERQIKAL
KAGVQIVVGTPGRMIDHINRKTIKLNNVHTVVLDEADQMLDMGFLEDIERILQETPENRQ
TLLFSATMPKEIENLARNYQKKPEKIKVVHEVLTVPLIEQYYYEVKPHEKLEVLTRLLDM
EKEGLTIIFCRTKKGVDELVESLQSRGYFSEGLHGDLKQSQRDRVMKKFREGTVDLLVAT
DVAARGLDVNNVHIVINYDIPEDLEYYVHRIGRTGRAGKAGVTYTFVTGRQIGLLKSIER
FTKSKIRRKPIPSVNDLAERQREVFKKRIVSTIEAGHLTPYISLTETLAEEYSSIEVAAA
LAKIIMEKERTGLVDRSEDLFDDTGATESDKARIFINIGKRDRIRAADILGAVANEGGIS
GREVGTIDLFDKYAFVEVPKNQAAKLVKKLNKIRIKGKKINAEPANQR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacattacttttaaacaactaggacttatgccggaaatattgaaggcaattgat
gccctgggctatgaggaaccgacgccgatccaaaaggctgctatgcctgcggtaatggat
ggaaaggatattattggtcaagcacaaaccggcacagggaagaccgcagccttcagtatg
cctgtcattcaaaaactttctctagatgtgaagggaccacaagccctaatccttacacct
acaagggaactggcggtacaagtagctgacgaaatcagcaagttttcaaagtatctatcc
ggtgtaaagactttggctatttatggaggtcaacctatagaacgacaaattaaggcatta
aaggcaggtgtacaaatcgtagtaggtacgccaggtagaatgattgatcatattaaccgt
aagacgataaaactgaataatgtgcatacggttgtattagatgaagcagatcaaatgttg
gatatgggatttttggaggacatagaaagaattctgcaggaaactcctgaaaatagacaa
acgttactattttcagcaacgatgccaaaagaaattgaaaatttagcgcgtaattatcag
aaaaaacccgaaaaaatcaaggttgtccatgaggttttaacggttccccttattgagcaa
tactactatgaggtcaaacctcatgaaaagttagaggttttgactagattgctggatatg
gaaaaagaaggtttaaccatcatattctgcagaacaaagaagggtgtagatgaactggta
gaaagtctacagagcagaggatacttttcagaaggactacatggagacctaaaacaaagt
cagcgggatcgcgttatgaagaagtttagagaaggaactgttgaccttttggtagctaca
gatgtagcagctagaggcctggatgtaaacaatgttcatattgttatcaactatgatatc
ccagaggacttagaatattatgttcatcgtattggcagaacaggcagggcaggcaaagct
ggagtaacctatacctttgttacaggcagacaaattggattattaaaaagtatagaaaga
tttaccaaatcaaaaattcgccgtaaaccaattccgtcagtaaatgatttagcagaaaga
cagagagaagtgtttaaaaagagaattgtatctacgattgaagcaggccatttaacacct
tatatttccttaacggagacattagctgaagaatatagttcaatcgaagtagctgctgca
ttagctaaaattattatggaaaaagaacgtacaggcttagtggatcgaagtgaagacttg
tttgatgataccggtgctacagaatctgataaagctagaatatttattaatatcggaaaa
agggatcgtataagagctgcggacattttaggtgctgttgccaatgaaggcggtatatcc
ggtcgtgaagtaggaaccattgacttatttgataaatatgcttttgttgaagttcccaaa
aaccaagccgccaagttagtaaaaaaactgaataaaatcagaattaaaggtaagaaaata
aacgctgaacctgcaaaccaaagatag
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