Geosporobacter ferrireducens: Gferi_09390
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Entry
Gferi_09390 CDS
T04493
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03420
Nucleotide excision repair
gfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gferi_09390
03430 Mismatch repair
Gferi_09390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_09390
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gferi_09390
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gferi_09390
MMR (mismatch excision repair)
Other MMR factors
Gferi_09390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DUF6204
DEAD
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOT69779
UniProt:
A0A1D8GFT4
LinkDB
All DBs
Position
complement(1936404..1938578)
Genome browser
AA seq
724 aa
AA seq
DB search
MIFREDQISIMAYSGGTMAVPAVPGAGKTFIIANLAADILLKQKHKPGKLLIVTYMLSAA
NNFKSRIGKLLEEKGFSNMSDYEVMTIHSLALRILKECPDAIGLHEDFDILDEGKRNIFL
QQGFAYWLYQGGEDSLKSFLHTEKGFKQWKDGFHGVAGALISKLKLHDLSAGTFKKMAAE
QREPLLTAVSNIYGIYDKALRSNGYIDYDDLLNFSYKVLKQDARIRERYQNRYTYIFEDE
CQDSNLLQGKLLSLLSEKNGNLIRVGDINQSITGTFSASNPVFFKEFCSQAQHCHTMDMA
NRSSTDIIGMANFLVQDVSQSHPEPSCRDALTAQYIRPVPAGPWGQNPKFNEYHLYSYIE
NSWDGEIYRAIRLLKGFKKKYPDKTAALLVPSNYHVESMASVLKKEGIEYDELSNTSEKR
MRPVRTLGMVLDYLAQPESKDKFLQLLQQFMGGKEGKEAEKLWAWVGKHNPEQFLYQQRE
TEQEEKAVNQLISANLRQEFWKQIERIRRILDLPQTRIEDLILKAVDLLSFEKEEKAMAE
AVAFFIRNRRAREPRLTYSEIADLLTHQGGKIFKTAAEVIYDLQEYEPNADRVTVCTYHK
AKGLEWDCVMLLGLTQYNFPSSLVHKNRSEYWYLKEDYKNPTAVGNAQIDRLLGRESPQN
PVIEAKEEVIREKIRLLYVGITRAKEFLILLAHQQYGEKGKSEEVSYYFQRLAEYIRSQR
SKQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatctttcgagaggatcaaatatcgattatggcctatagtggaggtactatggcagta
ccagctgtaccgggagcaggaaaaacctttattatagccaatctggctgctgatatttta
ttaaaacaaaaacataagccaggaaaattactgattgtaacctatatgctgagtgcagcc
aataattttaaaagcaggattgggaaactattggaggaaaaaggtttttccaatatgagt
gactatgaagtcatgaccatccacagcttagcgctgagaattctaaaagagtgtcccgat
gccattggactccatgaggattttgatattctagatgagggaaagagaaatatttttttg
caacaggggtttgcttattggttataccaaggtggggaggactctctcaaaagctttctt
catacggagaaggggtttaaacagtggaaggatgggtttcatggagttgctggtgctttg
atcagcaaactaaaactccacgatctcagtgcgggcacttttaaaaaaatggcagcagaa
cagagggagccgcttttgacagcagtgtctaatatctatggcatttatgataaggcgctt
cggagcaatggctatattgactatgatgatctattgaacttttcctacaaggtcctgaaa
caggatgcaaggatcagagaacgatatcaaaatcggtatacttacatatttgaagatgaa
tgccaggattccaatctgctgcagggaaaactgctgtcattgctctcagagaaaaatgga
aatctcatccgggtaggagatataaatcagagcattacaggaactttttctgcatcgaat
cccgtattttttaaagaattctgcagtcaagcccaacactgtcacacaatggatatggcc
aatcgaagttcaacggatattatagggatggctaattttttggtgcaggatgtcagtcaa
tctcatccagaaccaagctgcagagatgcgttaacagcacaatatattcgcccggtgccg
gcaggaccctggggacaaaatccgaagttcaatgaatatcatctctatagctatattgaa
aatagctgggatggagaaatttatagagcaatacgcttattaaaaggctttaaaaaaaaa
tatcctgataaaacagctgcactgttggtaccttccaactatcatgtggaatcaatggct
tcagtcctgaaaaaagaaggaattgaatatgatgaattgtctaatacttcggagaagcgg
atgcggccagttagaaccttaggaatggtgttggattatttagcacagccagaaagtaaa
gataaatttttgcaattattgcagcagttcatggggggaaaagaaggaaaagaagctgag
aagctgtgggcttgggtgggcaaacataacccagagcagtttttgtatcaacaaagggaa
accgaacaagaggaaaaagccgtaaatcaactaatttctgctaatctccgtcaagaattt
tggaagcagattgagcgcataagaagaattctggatttgccgcagacaagaatagaagat
ttgattttgaaagctgtagatttgctttcctttgaaaaagaggaaaaggctatggcggaa
gcagtagccttttttattaggaaccgcagggcaagggagccaagacttacttacagtgag
atagcagacctgctgacgcatcaaggcggtaaaatatttaagactgctgcggaggtaatc
tatgatctacaggaatatgagccgaatgcagatcgcgttacggtgtgtacataccataaa
gcaaagggattggagtgggactgtgtgatgttgctcgggttgacccagtataattttcca
tcctcccttgtccataaaaaccgttcggaatactggtacctgaaagaggattataaaaat
cctacggctgtaggaaatgcacaaattgatcgattgctaggaagagaaagcccccaaaat
cctgtaatagaagctaaagaggaagtaatcagggagaaaatccgattgctgtatgtggga
atcaccagagccaaggaattcttgattcttttagcccatcaacaatacggtgaaaaaggt
aaatctgaggaagtatcctactactttcaaagattggccgaatatattcgatcacaaagg
agtaaacagctatga
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