Geosporobacter ferrireducens: Gferi_09400
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Entry
Gferi_09400 CDS
T04493
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03410
Base excision repair
gfe03430
Mismatch repair
gfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Gferi_09400
03430 Mismatch repair
Gferi_09400
03440 Homologous recombination
Gferi_09400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_09400
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Gferi_09400
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Gferi_09400
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gferi_09400
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF34_NIF3
Motif
Other DBs
NCBI-ProteinID:
AOT69781
UniProt:
A0A1D8GFT9
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Position
1940792..1942510
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AA seq
572 aa
AA seq
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MVETLWKFHDIDSKFIPLQNGINPIVQKVLFYKGITEAAEMEEFLSPKPKKTYNPFLMRN
MEEASALILQYIREKKNIWIYGDYDVDGVASIALLMDFLSRFTDHLHYYIPLRAEEGYGL
NCDAIQEIKNNGADLIITVDCGSTSVKEVALAKSLGMEIIITDHHNLSEEKPDCLILNPK
QEDCPYPFKLLCGCGIAFKLAQALQKKLDAPKTCLNEILDLVALATVADVVPLIDENRTM
LKYGLQRMTHTTRHGLNFLIQSIGLGGKKITAYHIGYILGPHFNASGRIDDARAGVELLL
AKEPDKIVALTQHLIACNDERKLIQDQGLELCRERVEKEYQDDLFLVVDSGITHEGVIGI
IAGRIRDIYYKPTLVVTEAAEEGILKGSGRSIEGLDIYEELKKCADLFLKFGGHKNACGF
SIEKDKLNLLRQRLNLQAREIIENTPDIFRKSLKIYGIVTPPEITEKLVEDLERIEPYGM
GNEKPLFLIPNLKAPAPSDLLFMGKSKEHIKLRGISGNKGTMDAIGFGLADFYINHLNNP
AALDLLGFPCFNEWNGHKSIQFMISDMKRSSL
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaaccctatggaaatttcatgatatagattcaaaatttattcctctacaaaat
ggtataaaccctatcgtacaaaaagtactattttacaagggaatcactgaagctgcagag
atggaggaatttctttcaccgaagcctaaaaaaacctataatccattcttaatgagaaat
atggaagaagcttcagcactaatccttcaatatattcgcgaaaaaaagaacatctggatt
tatggtgattatgacgtagacggtgtagcgagcatcgctttattgatggactttttaagt
cgttttacagatcatcttcattactacattcccttgagagcagaggaaggctacggccta
aactgcgacgccattcaggaaattaaaaataatggagctgatttgattatcacggtagat
tgtggatctacttccgttaaagaagtagctttagccaaatccctggggatggaaatcatc
atcacagatcaccataacctttcagaggaaaagccagactgtttgattctcaatcccaaa
caggaggactgtccatatcccttcaagcttctctgcggctgtggcattgcttttaagctc
gcccaagcattgcagaaaaaactggatgcccctaaaacctgtctgaatgagatcttggac
ttagtggctctggctacagtagccgatgttgttccactgatcgacgaaaaccgtaccatg
ctgaaatacggcctacagcgaatgacccatacgacccgtcatggactaaactttttgatc
caatccattggcctcggtggaaaaaaaatcaccgcctatcatattggatatatcctaggg
cctcattttaatgccagcggaagaattgatgatgcacgggcaggagtagagctgcttctt
gctaaggaaccggataaaattgtggctcttacccagcacctgatcgcctgcaatgacgaa
cggaagctgatacaagatcaaggactggaactgtgccgtgaaagggttgaaaaagaatat
caagatgacctgtttttagtagtagattccggcattacccatgagggtgtcatcggtatt
attgctggaagaatccgggatatttattataaaccaacgcttgtagtcactgaagccgct
gaagaaggaattttaaagggaagtggccgcagtattgaagggttggatatttatgaagaa
ttaaaaaagtgtgcagatctctttctgaagtttggcggtcataagaatgcctgtggattt
tctatagagaaagataaattaaatctgcttcgccagcggctgaatctgcaggcccgggaa
atcatagaaaatacgccggatatttttaggaaatcattaaaaatttatggtattgtaacg
ccgccggagatcacagaaaaactggtcgaggatttagaacgcatagagccttatggcatg
ggtaatgaaaagcctcttttcctgatacccaatctaaaagctcctgcgccatctgatctt
ttgttcatgggaaaatctaaagaacatatcaaattgagaggtatttctggaaataaagga
accatggatgcaattggcttcgggttggctgacttctatataaatcatttaaacaaccct
gccgcattggacctgctgggttttccctgcttcaatgaatggaatggtcataaaagcatt
caatttatgattagtgacatgaaaagaagcagtctataa
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