Geosporobacter ferrireducens: Gferi_09545
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Entry
Gferi_09545 CDS
T04493
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03420
Nucleotide excision repair
gfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gferi_09545
03430 Mismatch repair
Gferi_09545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_09545
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gferi_09545
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gferi_09545
MMR (mismatch excision repair)
Other MMR factors
Gferi_09545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
Intein_splicing
UvrD_C_2
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOT69800
UniProt:
A0A1D8GFY0
LinkDB
All DBs
Position
complement(1968730..1971999)
Genome browser
AA seq
1089 aa
AA seq
DB search
MNLDHLNDKQREAVLKTEGPLLILAGAGSGKTRVLTHRIAYLIEELGVYPGNILAITFTN
KAAKEMKERVEALLGQQTEIWVSTFHSACVRILRRDIEKIGYTRDFVIYDAADQQNILKD
CLKELNVNDELFPVAMVQNKISDAKDRILTPHGLLKEAAGDFQLSKIAEIYELYQKKLKK
NNALDFDDLIFKTVELFRNEPKVLSFYQHKFQYIMVDEYQDTNQIQYTLVHMLANMHKNL
CVVGDDDQCLIEGMPVSTPTGEVPLEELDANSEIICASGQSEILTGTVEKKHCKAYQGVI
VRIKTKSGKEIKGTPNHIGFARLNPQVGVYYVYLMYKKGYGYRIGQTQGVRSRKGEIANG
MAVRLNQEHADKMWILKTCFHKEEAAFYEQLYSVKYGIPTTVFHDKGRNMAITQNYIDQI
FKEIDTEKAAVRLMEDLIIFEEYPHHLPNAVIRGKTARRVINVTAFGGRKAGVESGWHSH
RISLNTTGDELKERFRPEFPVRDGNRNTWRVETERVEYDEAVHYARKLEQIEEAFDIVKK
ARLTENKSYYYMPLAHMKPTMSIPVFDNGKIVEDTIAEVEFIDYNGMVYDLSIPHLRQYV
CGGVVVHNSIYSWRGADIRNILNFEDDFSNAAVIKLEQNYRSTQNILDAANCVIKNNRGR
KSKVLWTSNRVGDRIRYYKAMNEHEEGQFIVSQIQEMYESEGRNYGEFAILYRTNAQSRV
LEEMLMRAGVPYRIFGGLKFYARKEIKDIIAYLRLIQNSVDDLSVRRVINVPKRGIGDKT
IEKLEQHAARTGESLFSAMLEAEELGDFSRRVLAGFNSFASLIMKFSEVKNEMGVSELIS
KVLEESGYIEELQKENTMEANSRIENLQEFLSVALEFEKSTEENTLEEFLGTISLVSDID
QMEDQENAVVLMTLHSAKGLEFPIVFLAGMEEGIFPISRAMFSDHDLEEERRLCYVGITR
AREILFLTHALVRTLYGRTNYNSISRFINEIAEDYIDMDKKEEAKKQERILAPGAGIYRG
VSMEAKMKPVEGTDSNEIKPGSKVRHEKFGLGTVISVKGSGEKAELTIAFDNAGIKKLVL
GFAPIKLLG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagatcatttaaatgataaacagcgggaagcagtgctgaaaacagaaggtccg
ttactgattctagcaggtgcaggatcggggaagacgagagttttgacccaccgtattgct
tatttaatagaagagttgggagtatatccgggaaatatactggccattacctttaccaat
aaggcagctaaagaaatgaaggaacgtgttgaggcactcttaggacagcagacagagatt
tgggtcagtacctttcactccgcctgtgtgagaatactgcgaagagatattgaaaaaata
ggatatacgagagactttgttatttacgatgcagcagaccagcaaaatatcttaaaggat
tgcctcaaagaattaaatgtgaatgatgagttatttcctgtggcaatggtgcaaaataag
atcagtgatgccaaggaccgcatcctgacgccacatgggttactcaaggaagcagcaggg
gattttcaattaagtaaaatcgcagagatttatgagctgtatcagaagaagctcaagaaa
aacaatgcattagattttgatgatctgatttttaagacggtagaactgtttcgtaatgaa
cctaaggtgctcagcttctatcagcacaaattccaatatatcatggtagatgagtatcag
gataccaaccagattcagtatactttagtacatatgctggcaaatatgcataagaacttg
tgtgtggtaggggatgatgaccagtgtttgatcgaaggtatgccagtaagcacaccaaca
ggagaagttcccttagaggagcttgatgcaaattctgagattatctgtgcttcaggacaa
agtgaaatcctaactggcactgttgaaaagaaacactgcaaggcctatcaaggtgttatt
gtcaggatcaagacaaaaagcggaaaagaaatcaaaggaacacctaatcacattggcttc
gcccgtttaaatccacaggtaggcgtttattatgtgtatttaatgtataaaaaaggatat
ggctatcgaattggacaaacgcagggagtaagaagcagaaaaggcgagatagctaatggt
atggcagtaagattaaaccaggagcatgcagacaaaatgtggattttgaagacatgcttt
cataaagaagaagcagctttttatgaacaactatattctgtgaagtatggcatacctacc
actgtattccatgataaaggtagaaatatggcgatcacacagaactatattgatcagatt
ttcaaggagattgatacggaaaaagcagctgtccgattaatggaggatttgattatattt
gaagaatatccgcatcatttacccaatgcggttatcagagggaaaactgcaagaagagtc
atcaatgtgactgcttttggcggaagaaaagctggtgttgaaagcggatggcatagtcac
agaatcagtttgaatacaacaggagatgaattgaaggaaagatttagaccagaattccca
gtaagagatggaaatagaaatacgtggcgcgtagagactgaacgagtagaatatgatgaa
gcagttcattacgcaaggaaactcgaacaaatagaagaagcattcgatattgtgaaaaaa
gcaaggttaacggagaataaaagttactactatatgccattggcacatatgaaacctact
atgagtattcctgtatttgataatgggaaaatagtagaagatactatcgcagaggttgaa
tttattgattataatggcatggtctatgatctatctataccacatcttagacaatatgtt
tgtggtggagttgttgtccataattcaatttacagttggaggggggccgatatccggaat
atcctgaatttcgaggatgatttctccaatgctgcagtgattaagctggagcaaaattac
cggtccacgcagaatatattagatgctgcaaactgtgtcattaaaaataaccggggcaga
aaaagtaaagtactgtggacatctaatcgtgtaggagaccgcatacgttactacaaggca
atgaatgaacatgaagagggtcaatttattgtaagtcagattcaagagatgtatgagtcg
gaagggcgtaattacggagaatttgccatattgtacaggaccaacgcccaatcccgggta
ctggaagaaatgctgatgcgggcaggggttccctacagaatattcggtggtttaaagttc
tacgcacgaaaagaaatcaaggatattattgcttatctgcgattgattcagaactctgta
gatgatctgagtgtaagacgggttatcaacgtgccaaagcgggggatcggagataagact
atagagaagctggagcagcatgcagcgcgaacgggcgaaagcctctttagtgcgatgctg
gaagctgaagagctgggagatttttcgagacgggtccttgccggatttaacagctttgct
tcattaatcatgaagtttagtgaagtaaagaatgaaatgggtgtatcggagctcatatcc
aaggttttagaggaatcaggatatattgaagaactgcagaaagaaaataccatggaagcc
aattcccggatagaaaaccttcaggaatttctgtctgtggcgttggagtttgaaaaatcc
acagaagaaaataccttagaagagtttttagggaccatttccttagtttcggatattgat
caaatggaggatcaggaaaatgctgtggtattgatgacgctccatagtgctaagggactg
gaatttcccattgtatttttagcgggaatggaggaaggtatttttcctatctctagagcg
atgttcagtgatcatgatttagaggaagagagacgcttatgctatgtggggattacccgg
gcaagggaaatactgtttctaacccatgcattggtacgtacactctatggtagaacgaac
tataacagcatatccaggtttattaatgagatcgctgaagactatatcgatatggataaa
aaggaagaagcgaagaaacaagagcggatattggctcctggtgcaggcatctacagagga
gtcagtatggaagcaaaaatgaagcctgtggaaggtacggacagcaatgagattaagcct
ggaagcaaggttcgccatgagaaattcggtctagggacagtgatttctgtaaagggcagc
ggagaaaaggcagagctcaccattgcctttgacaatgcagggattaaaaagctggtgttg
ggatttgcaccgattaaattattagggtaa
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integrated database retrieval system
