Geosporobacter ferrireducens: Gferi_12555
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Entry
Gferi_12555 CDS
T04493
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gferi_12555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfe03019
]
Gferi_12555
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_12555
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gferi_12555
Messenger RNA biogenesis [BR:
gfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gferi_12555
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gferi_12555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
HTH_40
DEAD
HRDC
RecQ_Zn_bind
HHH
Motif
Other DBs
NCBI-ProteinID:
AOT70350
UniProt:
A0A1D8GHK1
LinkDB
All DBs
Position
complement(2678256..2680412)
Genome browser
AA seq
718 aa
AA seq
DB search
MDLNRILREYFGYESFRKGQYELIQGILSGQDVLGIMPTSGGKSLCYQIPALLMEGITLV
ISPLISLMKDQVDALRESGISATYLNSTLTSQEQRIRLEEIRTGQYKLVYIAPERLNTPD
FLNIVMDVSIPFIAIDESHCISQWGHDFRPSYKEIPRFIARLNRRPILGTFTATATEEII
KDIKGILRLNRPLEIVTGFDRPNLYFRVEKGIDKKKYLLNYLKKRSDQSGIIYCATRKEV
ESLNKELKDKGFFVSMYHGGMGTEERQEAQDTFLYDQSSIMIATNAFGMGIDKSNVRYVI
HFNMPKNMEAYYQEAGRAGRDGENSECILLFSPQDVVKQKYLIELNTMHSEREIVAYKNL
QILIDYCHTHDCLRKRLLTYFGETTDWVQCGKCSNCLDDREKRDITLEAKKILSCVYRMK
ESFGVTMVANVLSGSKNKKVFALGLEKLSTYGIMEEYTTKDIQQIILFLVAEGYLTMTEG
KYPVVKLTPQSAAVLKGKEEVYKRGEITAMECQEEGTVHESLLKDLKDLRMKIALEKGVP
PYVIFPDTTLKEMAVYLPESKEALLKIKGIGAVKAETYGGLFLRTIISYMNKNNIESTVS
KPEKDLSSKSKGPDKIQSHLETYALHQQGLSIEKMAEERGCTENTILSHLEKCFSEGLEI
NPEGMVDEAIEKQILEVIDRVGSQYLKPIKEALPEEISYFDIKKVLLKKSIDTASSSM
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaaccgtatactaagagaatattttggttatgaaagttttagaaaaggccaa
tatgaattaattcaagggatattaagtggacaagacgtattaggcattatgcctaccagt
ggagggaaatctttatgttaccaaattcctgctttattgatggaaggcataacgttagtc
atttcaccgcttatatcattaatgaaagatcaagtagatgccttaagagaatccggtata
tcagctacttatctaaacagtaccttaacatcacaagaacaaagaatacggctagaggaa
ataagaacaggtcaatataaacttgtgtatatcgctccagaaagattaaacactcccgac
ttcttaaatattgtgatggatgtaagcattccgtttatagcaatagatgaatcccattgc
atcagtcagtggggacatgattttaggccgagttacaaagaaatacccaggtttatcgct
agattgaatcgccggccaatactaggtacctttacagctacggcgacagaagaaattata
aaagatataaaaggaatcttgaggcttaaccgaccattagagatcgtgacgggttttgac
cggcccaatctttattttcgcgttgaaaaaggcatagataagaaaaaatatcttctaaat
tacttaaaaaagcgttcagatcaatcaggaatcatttattgtgctacacggaaagaagta
gagagcttaaataaagaattaaaagacaaaggtttctttgtcagcatgtatcacggggga
atgggaactgaagaaagacaagaagctcaggatacttttctctatgatcagagttcaatt
atgatagctaccaatgcttttgggatgggaatagataaatcgaatgttcggtatgtgatt
cactttaatatgccaaagaacatggaagcttattatcaggaggctggcagggcaggcaga
gatggtgaaaacagtgaatgtatcttattgttttctccccaggatgtagtaaagcaaaaa
tatctcatagagctcaatacgatgcactctgaaagagaaatcgtagcatataaaaacctg
cagattttgatcgactattgtcatacccatgactgtttaaggaaaagacttctaacatat
tttggggaaacgaccgattgggtgcaatgtggaaaatgtagcaattgtttagatgacaga
gagaagagagatattaccttggaagcgaaaaagattctctcctgtgtttacaggatgaag
gaaagctttggtgttacaatggtagccaatgttttaagtggatctaaaaataagaaagta
ttcgcattaggtttggaaaaactttcgacctatggaatcatggaggaatatacgacaaaa
gatatacagcagattattctatttctcgtggcagaagggtatcttacgatgacggaaggc
aaatatcctgtagtcaaattaacacctcaatcggcagccgtattaaaaggaaaggaagaa
gtatataaacgaggagaaattactgcaatggagtgccaagaagaagggacagttcatgaa
agcctattgaaagatctaaaggatttacgtatgaaaattgccttagagaagggtgtgcct
ccctatgttatctttcctgataccacattgaaagaaatggctgtatatttaccagaaagc
aaagaagcactgctaaagataaaggggattggagcggttaaggccgaaacctatggaggg
ctgttccttcgcacaattataagctatatgaataaaaacaacattgaatccactgtttca
aagccagaaaaagacttgtcatcaaaatcaaaggggcctgataaaattcaatcccatctt
gagacttatgcactgcatcaacaaggattatctatagagaaaatggctgaagaaagaggc
tgtacagagaatacaatattaagccatttagagaagtgtttttcagagggtttagagata
aaccctgagggcatggttgatgaagctatagagaaacagatcttggaagtgatagaccgg
gttgggagccagtatctcaagccgattaaagaggcattgccggaagagatatcttatttt
gatattaagaaggtgcttttaaagaaaagcatagatactgcttcaagtagtatgtga
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