Geosporobacter ferrireducens: Gferi_17355
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Entry
Gferi_17355 CDS
T04493
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gferi_17355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfe03021
]
Gferi_17355
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_17355
Enzymes [BR:
gfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gferi_17355
Transcription machinery [BR:
gfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gferi_17355
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gferi_17355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AOT71161
UniProt:
A0A1D8GJS6
LinkDB
All DBs
Position
3709849..3713337
Genome browser
AA seq
1162 aa
AA seq
DB search
MFELNNFESIKIGLASPEKIRSWSKGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFASYIVTDPGETSLSYKQLLSEKEYREYRDKFGNQFKAAMGAEAIKDILN
QIELEKLSKDLRVKLRDSSGQKRIRTIRRLEVVEAFKKSENNPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MALELFKPFVMKRLVNDGYAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNIL
APKDGAPITTPTQDMILGSYYMTVEVENAPGEGMIFKDFEEMLMAYENKVVTLHTKVKVR
RKLSLDDSGKLVESTVGRFIFNEKIPQNLGFVDRTEDKYALEIDFLCDKKALGKIIDKCF
RVHGNTMTAHMLDHIKQMGFHYSTIGAITISVSDMEIPKEKEEFLSMANEIVDKYEKAYR
RGLISDEERYEKVIQTWQETTEKVTDALMKNLGKLNNVFIMAHSGARGSKNQIRQLAGMR
GLMANATGHTVEIPIKSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVS
QDVIIREIDCGTNEGIAVEDFKDGNELIESLYDRIVGRYALEDIRHPETGELFIEASKMI
PEHIASKIIDAGINKVKIRTVLHCRTKHGVCGTCYGRNLATGEAVNVGEAVGIIAAQSIG
EPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIISEINGSVSINETKKNRE
VTVTDEYGEARTYSIAYGSRIKVKEGQRIEAGDEITEGSVNPHDILRIKGVSGVQQYLVK
EVQRVYRMQGVDINDKHIEVIVRQMVARVKIEDAGDTDLLPGGLSNVYEFEAENKAVEDN
GGKPAVGKRVLLGITKASLATESFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVIIGK
LIPAGTGMRRYKNIAIDHKIED
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattgaacaactttgagtctataaagattggattagcttcaccagaaaaaatt
agaagttggtcaaagggagaagtaaagaaaccggagaccattaactatcgtacactgaaa
cctgaaaaagaagggttgttttgtgaaaagatttttggacctacgaaggactgggaatgt
cactgcggaaagtacaaacgggtaagatataaaggcgttgtatgtgatcgatgtggcgtt
gaagtgacgaagtcaaaagttcgaagggagagaatggggcatatcgaattggctgctcct
gtatctcatatttggtatttcaaaggaattccaagcagaatgggactattattggatatg
tcccctcgtgctttagaaaaagtgctttactttgcatcttatattgttacagatccggga
gaaacctccttaagctataagcagctgttgagcgaaaaagaatatcgggaataccgtgat
aagttcggcaatcaatttaaggcagctatgggagctgaagcgattaaagatatcttaaac
caaatagaattggaaaaactttcaaaagatctgcgtgtaaagctgcgagacagttcgggg
caaaaaagaatccgaacgatccgcagactagaggttgtcgaagctttcaaaaagtctgaa
aataatcctgagtggatgatcctggatgttatccctgttattccgccggatctaagaccg
atggtacagttggatggtggtagatttgctacttctgacctgaacgatctatatagaagg
gtaatcaatcgaaacaatcgactcaagaggctgttagatcttggcgcgccggatattatt
gtgcgaaatgagaaacgtatgcttcaggaagcagtagatgcattgattgataacggcaga
cgcggcagaccggtaactggacctggaaacagaccgttaaagtctctatctgacatgtta
aaagggaagcaaggacgttttagacaaaacttgctgggtaagcgtgttgactattctgga
cgttctgttattgttgtagggccggaattaaagttttaccagtgcggattgcctaagaaa
atggcactagaattatttaagcctttcgtaatgaaacgccttgtaaacgacgggtatgcg
cataatattaaaagtgcaaaaagaatggtggaaagagtgcggccagaggtatgggatgtg
ttggaagaggtcattaaggaacatcctgtgttgctcaatcgtgccccgaccttgcataga
ctagggattcaggcttttgaacccatactggtagaaggtaaggcgatcaagctgcatcca
ttggtttgtacggcatacaatgctgacttcgatggagaccagatggcggtgcacgtgcca
ttgtcagtagaagcacaggcggaagccagattcttgatgctttccgtaaacaacatcctg
gcaccgaaagatggtgccccaattactacgccaacccaggatatgattttgggcagctac
tatatgactgtagaagtggagaatgccccgggcgaagggatgatctttaaagattttgaa
gaaatgctgatggcctatgaaaataaagtcgtcacccttcatacaaaggtaaaggttcga
aggaagctgtctctggatgattctgggaaactggttgagagcaccgtaggaagattcatt
tttaatgagaagattccacaaaatctagggtttgtagatcggacggaagacaaatatgcc
ttggaaatagatttcctttgtgataagaaggctttaggaaaaattattgataagtgcttt
agggttcacggcaatacaatgacagcccatatgctagaccatatcaaacagatgggcttc
cattattccacgatcggggcgatcaccattagcgtatctgatatggagatccctaaagaa
aaagaagaattcttgtcaatggccaatgaaattgttgacaaatatgaaaaggcttatcgc
agaggactgatctctgacgaggaacgatatgaaaaagttattcaaacttggcaggaaaca
acagaaaaagttacagatgcattaatgaaaaatctaggtaaattaaacaatgtatttatc
atggcacactccggagcgaggggtagtaaaaatcagattcgtcagctggctggtatgcgt
ggattgatggccaatgcgactgggcatacagttgaaattccgattaagtctaacttccgt
gaaggcttatcggtactagaatatttcatttctacccatggagctagaaaaggactggcg
gatacagccctaagaaccgcagactctggatacttaacaagaagacttgtagatgttagt
caggatgtaattatcagagaaattgactgtggaacgaacgaagggattgcagttgaagac
ttcaaagatggaaatgaattgattgaatctctatatgatagaattgtaggaagatatgcc
ctagaagatataagacatccagaaacaggagaattatttattgaagccagcaaaatgatt
ccagaacatattgcaagtaaaatcatcgatgcgggcattaacaaagttaagattcgaacc
gtactacactgtagaacaaagcatggtgtatgtggaacctgctatggaagaaacttagca
acaggagaagcggtaaacgtaggagaggctgtaggaattattgcagcacaatctatcgga
gaaccgggaacccagctgaccatgcgtaccttccatactggaggggttgctggagccgat
atcacacagggtctaccaagggtagaggagcttttcgaagctagaaagcctaaaggatta
gcgatcatctccgagattaatggcagtgtgtccattaatgaaacgaagaaaaatcgtgaa
gtgaccgttacggacgaatatggtgaagcgcgaacctactctattgcctatggttctagg
atcaaagtaaaggaaggccaaagaatcgaggcaggagatgaaataacagagggatctgta
aatccccatgatatcctgcgcatcaaaggcgttagtggtgttcagcagtaccttgtaaag
gaagtacaacgggtttacagaatgcaaggggttgatattaacgataagcacattgaggta
attgtacgtcagatggtagcgcgggtaaaaattgaagatgcaggagatacggatttgctt
ccaggtggacttagcaatgtatatgaattcgaagcggagaacaaagcagtcgaagataat
ggcggtaagcctgcggttggaaagcgtgtgttgctaggaattaccaaagcttcccttgca
acagaatccttcttatctgcagcatccttccaagagaccactagagttctaacagaagca
gctattaagggcaaggaagatcatctgatcggattaaaagaaaatgtaattattggtaaa
ctcattcctgcaggtacaggtatgagaagatacaagaatattgctatcgatcataaaatt
gaagattaa
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integrated database retrieval system
