Geosporobacter ferrireducens: Gferi_20260
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Entry
Gferi_20260 CDS
T04493
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03420
Nucleotide excision repair
gfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Gferi_20260
03430 Mismatch repair
Gferi_20260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_20260
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gferi_20260
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gferi_20260
MMR (mismatch excision repair)
Other MMR factors
Gferi_20260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AOT71663
UniProt:
A0A1D8GL80
LinkDB
All DBs
Position
complement(4303082..4305277)
Genome browser
AA seq
731 aa
AA seq
DB search
MKNTFTDLLAGKYGISLNIQQQKSLYHKDGPAMVLAVPGAGKTTLLICRTAHLIFMHNID
PKNILSLTFSKASAKDMGDRFSQLFKDIAHKEVHFSTIHSFAYGVLRQFAAKQKLRYTFI
EQENQSMNKAMLLKQIYREVNQDYLAEDKLEELSNAISYIKNMMIPSSQIYTTDFEIDRL
SELYIRYENYKKSNFLIDFDDMLCLALEILQNNPLLLNKYRQQYSYIQVDEAQDTSKIQH
EMIRLLAAPSNNLFMVADDDQSIYGFRGAFPEILLRFDKDYPNAKLFYLEQNYRSTQNIV
HASSCFISKNQHRYPKKLYTENPMKDPIEIFSLQDEESQLVYLIEQLKNNLPASTAAVLY
RNNLSAIPLVEVLDRSGIPFCIRDTKLHFFRHWIVQDLLAFLDLSMNHFDLESFERIYYK
MNRYIPRTALDYIKTMRNKQSVFDCLIQFPGFRSYQKDRMIDLKKDFTELAAKSPLEALL
FIENHLNYNNYLQTNSKRLKYSYDTLQIILSNLKRIANHTNSFIEFLERLHQLPRLMETS
KKQKQNSVFLSTIHSAKGLEFDHVYIIDLIDGQFPTASSSADHEAGDSTALEEERRLFYV
AMTRARTSLQLLTTDFYNGALVKPSQFLQEVKGYINKIRPTENQNKKAQTSNLNRSSLWN
HFSKPFSKKESLEHPFFEGAAVKHISFGIGTVKEIRQDTLCIDFSEIGERSLSLNLCVEK
QLLTLLPHSNF
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaatacttttacagatctgttggctggcaaatatggtatttccttaaatatccaa
cagcaaaaatcactttatcataaagatggaccagctatggtattggctgttccaggagca
ggcaagactacgcttctgatctgtagaactgcacatcttatattcatgcataatattgat
cctaagaacattctttcacttacctttagtaaagcttcagcaaaagatatgggggatcgg
ttcagccagttgttcaaggatatcgcccataaggaggttcacttctccactattcacagc
tttgcatatggtgttttgagacagttcgcggcaaagcaaaagctccggtatacttttatt
gaacaagaaaatcaatcgatgaacaaagcaatgctcctcaaacagatttatagggaagtc
aatcaggattacttagcagaggataagttagaagaactatcaaatgccatcagctatatt
aaaaatatgatgataccctcgtcacaaatctatactactgattttgaaattgaccggctt
tcagaattatatattcgctatgaaaattataaaaaaagtaattttctcattgattttgat
gatatgctctgcttagcattagaaattcttcaaaacaatcctctattgttaaataaatat
cgccaacaatattcctacatacaggtagatgaagcacaagatacatcgaagatccagcat
gaaatgattcgcctgctggctgctccaagcaataatttgttcatggtggcagacgatgat
caatcaatttatggtttccggggagccttccctgaaatactgctgcgttttgataaagat
tatcccaatgcaaagctgttttatttggaacaaaattatcgatccacccagaacatcgtt
catgcaagcagttgtttcatcagcaagaatcagcaccgttatccaaagaagctgtataca
gaaaatcctatgaaagatcccattgagatcttttctctgcaggatgaagaatcccaattg
gtttacttgatagaacaacttaaaaataatctgccggcttcaacagcagctgttctctac
cgcaataatctctcagccatccccttggtagaagttctggaccgcagtggcatacccttt
tgtattcgagacacaaagcttcatttttttagacattggatcgttcaggatctccttgca
tttctggacttgtctatgaatcactttgatttggaatcctttgagagaatttattataaa
atgaaccgttacattccaagaactgccttagattatataaaaaccatgcgaaataagcag
tcggtttttgattgtctgatccagtttcccggatttcgcagctatcagaaagatcgtatg
atcgatttgaaaaaagattttacagaattagccgcaaagtcacccttagaagcactccta
tttattgaaaatcatctaaactacaacaactacctgcaaaccaacagcaaacgtttaaaa
tactcttatgatacccttcagatcattttatcgaatctgaaacgcatagctaatcatacg
aatagttttatagagtttttagaaagattgcatcaattgccgaggcttatggaaacatcg
aaaaaacagaagcaaaactcggtttttctttcaaccattcatagtgccaagggattggaa
tttgatcatgtttacattattgatctgatcgatgggcagtttcctactgcatccagttct
gcagatcatgaagcaggagattctacagcgctagaggaagaacgaagacttttttatgta
gccatgacacgggcccgtacctctttacaactattaacgactgacttttataatggtgcg
ctggttaaaccgtctcagtttctgcaagaagttaagggatatattaataaaatccgtcct
accgaaaatcaaaataaaaaagcacaaacatcaaatctcaatcgatcttcactatggaat
catttttcaaaacctttttcgaaaaaagagagtcttgaacaccctttttttgaaggtgct
gctgtaaagcatatttccttcggtattggcaccgtaaaggaaattcgccaagatactttg
tgcattgatttttcagaaatcggcgaaagaagcctctccttaaatctttgtgttgaaaag
caattattaacactactgcctcattctaatttttaa
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