Geosporobacter ferrireducens: Gferi_20940
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Entry
Gferi_20940 CDS
T04493
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03030
DNA replication
gfe03430
Mismatch repair
gfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gferi_20940
03430 Mismatch repair
Gferi_20940
03440 Homologous recombination
Gferi_20940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfe03032
]
Gferi_20940
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_20940
Enzymes [BR:
gfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Gferi_20940
DNA replication proteins [BR:
gfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Gferi_20940
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Gferi_20940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
DUF6282
Motif
Other DBs
NCBI-ProteinID:
AOT71782
UniProt:
A0A1D8GLW9
LinkDB
All DBs
Position
4469199..4472669
Genome browser
AA seq
1156 aa
AA seq
DB search
MGEFVHLHVHTEYSLLDGFARIRDLAQMAKNMGMKAIAITDHGSMFGVIDFYKQAKKHGI
KPIIGCEVYTAARRMNDRDPVKDKNQGHLVLLAKNMMGYKNIMKIVSLGYTQGFYYKPRI
DFEVLENYSEGVIALSACLAGQVQRELLNGNFMAAKETALRLEKIFGKEHFYLELQDHDI
EEQKTVNRELIKLSQETGIPLVATNDVHYLRQEDADSHDILLCIQTGKTVQDKDRLKFST
NAFYLKSPEEMEALFSYVPEALENTVKIANSCQVDFDFDQIHLPKYDVPEAEEPKDYLYR
LCYEGLRERYGEGADQLKERLDYELNTIIDMGYVEYFLIVWDFIRYAKENNIMVGPGRGS
AAGSIVAYVLGITDIDPIKYNLIFERFLNPERISMPDIDIDFCFERRQEVIDYVIQKYGQ
EKVAQIITFGTMAARAAIRDVGRAINLSYAEVDGIAKQIPMQLGMTIDKALEVNPSLKAL
YKENEQAKYLIDVARALEGMPRHASTHAAGVVISKEAVDEYVPLYMHEESITTQFTMGTL
EELGLLKMDFLGLRNLTVIRDALDLIEKNHGVKIDFSNSNYDDPKVYELISRADTLGVFQ
LESAGMRQFMKDLKPDNFEDIIAGISLFRPGPMESIPRYIQYKNNPHMIQYLHPKLEPIL
NVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMGKKKMEVMEQERQYFIHGKTDEAGN
LEIAGCIRNGVPEDVANRIYDEMIDFAKYAFNKSHAAAYAVLGYQTAYLKCYYPVEFMAA
LLTSVMGNTSKVAQYIQDCKKMDMEILPPSINESGPKFTVENGKIRFGLMAVKNVGLGII
DAIVQARQDKGRYVSFMDFCEKVDSKEVNKRAIESLIRCGAFDHIGANRAQLLAIFERVI
DGIQQDRRRNIEGQVSLFSNFDEVLPETVKEDVLPNVEEFPQKMLLAMEKETTGLYITGH
PLAEFEEEILRLSTVNTGELVELKENEENSDLRDGAYVRLAGLIIHRINKTTKNNKIMAF
VTLEDLYGTVEVLIFPNVYDKSANLLYEDQAVVVEGRITMKEEEEPKLIAEKILPLVKMD
HSYSGLSLTISREKGLQVIERVKPVLQQWKGNVPVYIYIEEQNKKLKANAELWVEINSSL
MEELRKILGAECVKVS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgggagagtttgttcatttgcacgtccatacagaatacagtttattagatggttttgcc
agaattagagatttagcccaaatggcaaaaaatatgggtatgaaggccatcgccattacc
gatcatggctcgatgtttggtgtaatcgacttctataaacaggcaaagaagcatggtatc
aagcctattattggctgtgaggtatatactgcagcgagaaggatgaatgatcgggatcca
gtgaaagataaaaatcaagggcacctcgtcttacttgcgaaaaatatgatgggctataag
aatattatgaagatcgtttctttaggatatacacaaggcttttattacaagccccgtatt
gattttgaggttttggaaaactacagcgagggggtcattgctttgagtgcctgcttggct
ggccaggtacagagagagcttttaaacggcaacttcatggcagcgaaagagacggctctc
agactggagaaaatttttggcaaagaacatttttacttagaactgcaggatcatgatata
gaggaacagaaaaccgttaaccgggaattgattaaattaagtcaagagacggggattcct
ttagttgcaacaaatgatgtccattacctgagacaagaggatgcggatagccatgatatc
ctgctgtgtatccagacgggaaaaacggttcaggataaagaccgattaaaattttctacc
aatgccttttatttgaaatcaccagaagaaatggaagcactcttttcctatgtaccagag
gccctggagaacaccgtgaaaatcgcaaatagttgccaagtggatttcgatttcgaccaa
attcatcttccaaaatacgatgttccagaggcagaagagccgaaggactatctctatcgg
ctttgctatgaaggcttgagagaacggtatggggaaggtgcagaccaactgaaggaaagg
ttggactatgagttgaatacaatcattgatatgggatatgtagagtatttcttgattgta
tgggattttattcgttatgcgaaagaaaataacatcatggtaggtccgggaagaggatct
gcggcaggaagcattgtagcctacgtgttgggaatcacagatattgatcccatcaaatac
aatctaatctttgaaagatttttgaatcctgagcgaatcagtatgcctgatatagatatt
gatttttgctttgaacgaaggcaagaagtcattgattatgtaattcagaagtatggacag
gaaaaggtagcccagattattacttttggaaccatggctgccagagctgcaatccgggat
gtagggagggcaattaatctttcttatgcagaggtagatgggattgcaaagcagattcct
atgcagttgggaatgactatcgataaagcgctggaggtgaatccatcactaaaagcacta
tataaagaaaatgagcaggcgaaatatctcatagatgtggctagggctctggaagggatg
ccccgtcatgcctcaacccatgccgctggcgtagtgatctccaaggaagctgtggatgag
tatgtgcctttatacatgcatgaggagagtattactacccagttcactatgggtacatta
gaagaactgggacttttaaaaatggattttctagggttacggaacctaacggtgatccga
gacgcattagatctgattgaaaaaaatcacggggtgaaaattgatttttccaacagcaat
tatgatgatccgaaggtctatgagcttatcagcagagcagataccttaggagtattccag
ttggaaagtgctgggatgcgtcagtttatgaaggatttaaagccggataactttgaggat
atcatagctggtatttccctctttcgaccaggccctatggagtctattccccgatatata
caatacaaaaataatccgcatatgattcaatacctgcatcccaaactggaaccgattctc
aatgtgacctatggttgtttggtgtatcaagagcaggtaatgcaggtagtacgggatttg
ggaggttacagttacggacgcagtgacctggtacgcagagccatgggaaagaaaaagatg
gaagtaatggaacaagagcgtcagtattttatccatggaaaaaccgatgaagcgggaaac
ctagaaatagctggttgtattcgcaatggggtcccggaggatgtggccaaccggatttac
gatgaaatgatagactttgcaaaatatgcctttaataaatcccatgctgccgcttatgca
gtattaggatatcagacggcctatttgaaatgctactatcccgtagaatttatggcggca
ctgctgacaagtgtaatgggaaacacttcaaaagtagcccaatatattcaggactgtaaa
aagatggatatggagattcttccaccaagtataaacgaaagcggtcctaaattcactgta
gagaacggtaaaatccgatttggcttgatggctgtaaaaaacgtaggtttgggaattatc
gatgccattgtacaggcaaggcaggataaagggcgatatgtgagctttatggatttttgc
gagaaagtcgattcaaaggaggtaaataaaagggctattgaaagcctgatccgttgtggt
gcatttgaccatattggtgccaaccgtgcccaactgctggctatatttgaaagagttatc
gatggaattcagcaagatcgccgcagaaatattgaaggacaagtctcattgttttctaac
tttgatgaggttttgccggagactgtgaaggaagatgtattaccgaatgtagaagaattt
ccacagaagatgctgctggctatggaaaaagaaactacaggcttatacattacagggcat
cccctcgcagagtttgaagaggaaattttacgtctttcaacagtgaatacgggagaattg
gtagaattaaaggaaaatgaagaaaacagtgatctgagggatggcgcttatgtgcgtctg
gcagggttgatcatccatcgcatcaataaaaccacaaagaacaataaaataatggcattt
gttacattagaggatctgtacggtaccgtagaagtactgatctttccaaatgtatatgat
aaatcagcgaatctcctttatgaagaccaggctgtggtggtggaaggaagaattactatg
aaggaagaagaagagccaaagttgattgcagagaaaatactgccgttagtgaagatggac
cattcttatagcggcctctccttaacaatatcgagggagaagggacttcaggtgatcgag
agagtgaaacctgtacttcagcaatggaagggaaatgtacccgtatatatctatatcgag
gaacaaaataagaaacttaaagccaatgcggagctctgggtggaaatcaacagcagcttg
atggaggaactaagaaaaattcttggagctgagtgtgtaaaagtctcataa
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