Geosporobacter ferrireducens: Gferi_22905
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Entry
Gferi_22905 CDS
T04493
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gfe
Geosporobacter ferrireducens
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gfe03016
]
Gferi_22905
Enzymes [BR:
gfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Gferi_22905
Transfer RNA biogenesis [BR:
gfe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Gferi_22905
Prokaryotic type
tRNA splicing ligases
Gferi_22905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOT72137
UniProt:
A0A1D8GMN1
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All DBs
Position
4916245..4917441
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AA seq
398 aa
AA seq
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MFVIEPKEKQYKTIKVWLQDQTQVEEGCLKQAINLSQLPFLHQWVCLMPDTHEGFGMPIG
GVIALKDMIIPNAVGVDIGCGMAFVATNIHKSEFSENEYKQLVGDIMRDIPTGFAHHKAK
QSSTILDEALKCLDAYPRELVDEIERAYYQIGTLGGGNHFIEIQEDVQGVLGIMIHSGSR
NFGLKIANYFNQVAKDLNEKWKSPIPKFYDLSYLPTNTAEGKAYIQWMNLALEFARENRQ
KMLMVVQNKLQKRLSHIVFNNEVNAHHNYAALEEHYGEQVWIHRKGAIRTLKGELGIIPG
AMGSFSYIVEGLGNQEAFNSCSHGAGRKMSRSKAKQLYSVEKTILDLNQQGIVLGKTKKS
DVSDECRWAYKDIDFVISQELDLARPVKKLKTLCVIKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtaatagaacctaaagagaagcagtataaaacgattaaagtatggctgcaggat
caaacgcaggtagaggaaggctgtctaaagcaagcaataaatctctcacaactgccattt
ctacatcaatgggtatgcttgatgcctgatacccatgaaggtttcggcatgcccatcgga
ggagtaattgcgcttaaagatatgattatccctaatgcagtgggtgtggatattggctgc
ggcatggcatttgttgcgacaaatattcataaatcagagttcagtgaaaatgaatataaa
cagctggtgggagatataatgcgagatattcctacgggttttgcacatcataaggccaaa
cagtctagtacgatactggatgaagcgctgaagtgtcttgatgcatatcctagggaattg
gttgatgaaatcgagagagcatattatcagattggaactttaggcggtggaaatcacttt
attgagattcaagaggatgtgcaaggggttctgggaattatgattcattcaggcagtcgt
aattttggattaaagattgccaattactttaatcaagtggcaaaggatttaaatgaaaaa
tggaaatctcctataccaaaattctatgatctgtcttatcttccaacgaatactgcagag
ggaaaagcatatattcagtggatgaatttagcactggaatttgcaagagaaaatcggcaa
aaaatgctcatggtagtacaaaataagcttcagaagcggctttcccatattgtctttaat
aatgaagtgaatgcccatcataattatgcggcattagaggagcattatggagaacaggtt
tggattcatcgcaaaggtgctatccgtacattaaaaggagaattgggaatcattcccggc
gctatggggagtttttcatatattgttgaaggattaggcaatcaagaagcatttaacagt
tgttcccatggtgcaggaagaaaaatgtcccggtcaaaagctaaacaactttattccgta
gaaaaaacaatactggatttaaatcagcaaggcattgtactaggtaaaacaaaaaagtct
gatgttagtgatgagtgcagatgggcttataaggatattgattttgtaatttctcaagag
ctggatttagcccgtcctgtgaaaaagctgaaaaccctttgtgtgatcaagggatag
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