Geosporobacter ferrireducens: Gferi_24440
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Entry
Gferi_24440 CDS
T04493
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe02020
Two-component system
gfe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Gferi_24440
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Gferi_24440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfe03021
]
Gferi_24440
Transcription machinery [BR:
gfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Gferi_24440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
HTH_3
HTH_11
HTH_Tnp_ISL3
LacI
HTH_12
HTH_21
HTH_29
Fe_dep_repress
Sigma70_r4
HTH_IclR
Sigma70_r4_2
HTH_Crp_2
MarR_2
HTH_5
HTH_19
HTH_31
MarR
HTH_38
HTH_AsnC-type
Arg_repressor
HTH_AraC
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AOT72423
UniProt:
A0A1D8GNF2
LinkDB
All DBs
Position
5208768..5210162
Genome browser
AA seq
464 aa
AA seq
DB search
MKIGFHLNIEQIQKLVMTPELKQAIQILQYNTQELNQFIDEQLLTNPVLDISPTAESDTV
QKTEKPEKIEKDEIDWKEYFREYDDISYRQTSSREQKEDISFEQFVSTDTSLTDHLLFQL
QFSILKSQYKNVAKFIIESLDRNGYLTMDIGEIAAYFQVSNQIIENILSIVQTFDPPGIA
ARNLKECLLIQLKQKGVENPKIFEIVTTHLDDLAENRLANISKDLNISPKEVQEIADFIK
TLEPKPGRLFSSDDDIKYITPDVSVEKIDGEYIVIVNDSTAPRLSISSYYKRLLMHEEKD
SNTSKFLTDKLNSAMWLIKSIEQRRQTIYKVVKAIVEYQLEFFENGKRSLKPLTLKQIAE
EVGVHESTVSRAVNGKYMQTPRGTFEIKFFFTSGVSNQEGEGVASQSIKSMIREMIEEEN
HQKPLSDQIIAEMLQEKGINISRRTVAKYRDEMNILSSSKRKRY
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagggtttcatttaaacattgaacagatccagaagcttgtaatgacacctgaa
ttaaaacaagcaatacaaattttacaatataatactcaggaattaaatcagtttatcgat
gaacaactgttgacaaaccctgtattagatatatctcctactgcagagagtgataccgtt
cagaaaacggaaaaaccggaaaaaatagagaaggatgaaatcgactggaaggaatatttt
agagaatatgatgatattagctatcgccaaacatcatcgagagaacaaaaagaagatatt
tctttcgaacaattcgtttcaacggatacttcactaacggatcatttactctttcagcta
cagttttccattttaaaaagtcaatataagaatgtagcaaaatttattatagagagctta
gatagaaatggctatctaactatggatataggagagattgcagcttattttcaagtgagc
aatcaaattattgaaaatatattgtctattgtacaaacttttgaccctccaggcattgca
gccaggaacttaaaggaatgtctgctcattcagttaaaacaaaagggagtagagaaccct
aaaatatttgagatcgtcacgacccatttagatgatttagcagaaaacaggctggcgaat
atctctaaggatctcaatatatctccaaaggaagtacaggaaattgcagattttatcaaa
acgctggaacctaagcccggaaggctctttagttccgatgacgatattaaatatataaca
ccggatgtatctgtagagaaaattgacggagaatatatcgttattgtaaatgactcaact
gcaccaagattatcgattagtagctactataaacgattattgatgcatgaagagaaagac
tccaatacttctaaatttcttacagataagctgaactcggctatgtggctgattaaaagc
attgaacagagaaggcaaacgatttacaaagttgttaaggcgattgtagaatatcagcta
gaattttttgaaaatggaaaaagaagcctaaaacctttaacgctgaaacagattgcagaa
gaagtaggcgttcatgagtcaacggttagccgcgcagttaatggaaagtatatgcagacg
ccaagagggacttttgagattaaattcttttttactagtggcgtatctaatcaagaaggc
gaaggcgttgcttcacaaagtattaagagtatgattagggaaatgattgaggaagagaat
caccaaaaacctttgagtgatcaaatcatcgcagaaatgttgcaggaaaaaggcattaac
atttcacgaagaacagtggcaaagtatagagatgaaatgaatattctatcttcatctaag
agaaaacggtattaa
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