Geosporobacter ferrireducens: Gferi_25275
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Entry
Gferi_25275 CDS
T04493
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gferi_25275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfe03019
]
Gferi_25275
03009 Ribosome biogenesis [BR:
gfe03009
]
Gferi_25275
Enzymes [BR:
gfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gferi_25275
Messenger RNA biogenesis [BR:
gfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gferi_25275
Ribosome biogenesis [BR:
gfe03009
]
Prokaryotic type
rRNA helicases
Gferi_25275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_22
RNA_pol_Rpb1_1
SecA_DEAD
Cas3-like_C_2
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
AOT72574
UniProt:
A0A1D8GP51
LinkDB
All DBs
Position
5389031..5390380
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AA seq
449 aa
AA seq
DB search
MKNNFYSLGISTEIVDLLKENGITEPTSIQMQAIPMLLMGKDIIAQAQTGTGKTLAFILP
MMEKIDVNKTNVQALIITPTRELAIQITAETKKLAAEKKVNILAAYGGQDVEQQIRKLKG
NIHLVIGTPGRLLDHLRRKSISLAQLEMLVLDEADQMLHMGFLKEVEDILRQTPKNRHTM
LFSATMPKGIRAIASRYMKESIHIRAQSKNITLDEIKQIVIETTDRGKQDALCKAIDEYK
PFMAIIFCRTKRRVTALNEALQQLGYNSDELHGDLTQAKREKVMNAFRKIQIQLLVATDV
AARGLDIEGMTHIFNYDIPQDAESYIHRIGRTGRAGQSGVAITFVTPRDREALSLIEKGI
DMQIERKKIAKEVDRRESKLRDVETRGYGKKKPLNSARDKGFGGNKTSDKRSARSGKAKD
GNRRPDNKTAKGKSLGMTKSKTHHRGKKS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataatttttattcacttggaattagtacggaaatagtagatttattaaaggaa
aatggtataaccgaaccgacatcaatccagatgcaggcaattcccatgcttttaatggga
aaagatattattgctcaagcgcagactggaacggggaaaactctagcttttattttacca
atgatggaaaaaatagatgtaaataaaacgaatgtacaagcattgattattacaccaacc
agagaattagcgatacagattacggcagagacgaagaagcttgccgctgaaaaaaaagta
aacatactggcagcctatggtggacaagatgtagagcaacaaatcagaaaacttaaagga
aatatacatttggtaattggcaccccaggacgtctcttggatcaccttaggagaaaaagc
ataagccttgcgcagcttgaaatgcttgtattagatgaagcagatcaaatgctgcatatg
ggattcttaaaagaggttgaagatattttacgccagacaccgaaaaaccgtcatactatg
ttattctctgcaacaatgccaaaaggaattcgggcaattgcctcacgctacatgaaagaa
tctattcatattcgtgcacagagtaagaatataactctggatgaaatcaaacaaattgtc
attgaaacaactgataggggtaagcaagatgcgctttgtaaagctattgacgagtataag
ccttttatggcaatcattttctgtcggacaaaacggcgtgtcactgctcttaatgaggca
ttgcagcagcttggatataattctgatgaactgcacggtgatctgacacaagcaaaacgg
gaaaaggtaatgaatgcttttcgtaaaatccaaatacagcttctggtagcaacggatgta
gcggcccgtggactggatatagaaggaatgacccatatatttaactatgatattccgcaa
gatgcagaaagctatatccatcgcatcggacgtacgggacgggcgggacagagtggtgtt
gcaattacttttgtaacacctagagaccgtgaagcgctaagtttgattgaaaaagggatt
gacatgcagatagaaaggaagaaaattgctaaggaagtcgaccgtagagagagtaaactt
agagatgttgaaacaagaggctatggtaagaaaaaaccattaaatagcgcccgcgataaa
ggatttggaggaaataaaacctcagataagagaagtgcgcgtagtggcaaagcaaaagat
ggtaatcggagacccgataataaaaccgcaaaaggaaaaagcctgggaatgactaaaagc
aagacccaccatcgaggaaagaaatcgtaa
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