Christiangramia flava: GRFL_2421
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Entry
GRFL_2421 CDS
T04640
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gfl
Christiangramia flava
Pathway
gfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GRFL_2421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfl03019
]
GRFL_2421
03400 DNA repair and recombination proteins [BR:
gfl03400
]
GRFL_2421
Enzymes [BR:
gfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GRFL_2421
Messenger RNA biogenesis [BR:
gfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GRFL_2421
DNA repair and recombination proteins [BR:
gfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GRFL_2421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
APU69145
UniProt:
A0A1L7I7R8
LinkDB
All DBs
Position
2736961..2739156
Genome browser
AA seq
731 aa
AA seq
DB search
MGLTEIDLHKELKRYFGFSQFKGLQEQVVKSIVHGEDTFVIMPTGGGKSLCYQLPALISD
GTAIVVSPLIALMKNQVDAIRGISSEQGVAHVLNSSLNKTEVKQVKDDISNGVCKLLYVA
PESLTKEDYVDFLREQQISFLAVDEAHCISEWGHDFRPEYRNLRQIMKRIGDNIPVIALT
ATATPKVQEDILKNLGIPNANTFKASFNRPNLYYEVRPKTKNVDADIIRFVKQNDGKSGI
IYCLSRKKVEELAQTLQVNGVKAVPYHAGLDAKTRSKHQDMFLMEDIDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSVSRRKFILHYFGEDFDDVQGEGAAMDDNVRNPKKKHEAGRDLE
LLLKVVKETKELYKAKEVVKTLIGKSNALILSHKTDEHALFGAGKNQEGKYWMALVRQAL
VAGFLRKDIETYGVIKLTPEGEKFLKKPVSFQMTEDHIFDDSTEDSAASSKAPAAVDAQL
VKMLKELRKKVAKRKELPPFVIFQDPSIEDMALKYPTSIEELSNIHGVGEGKAKKYGQDF
VDLISRYVEDNDITRPDDLVVKSTGANSGLKLFIIQSVDRKLPLPDIASAKGMEMPEFIK
EMEAIVYSGTKLNINYYIDEILDEDQQEELHEYFLEAETDKIDEAMEEFDGDYEDEELRL
FRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaccgaaattgatttgcacaaagaactgaagcgttactttggattcagtcag
ttcaaaggtcttcaggaacaggttgtaaaaagcatagttcatggtgaggatacttttgta
ataatgcctaccggaggtggtaaatctttatgttaccagcttcccgctttgatttcagac
ggcactgccatcgtagtatctcccctaattgccctgatgaaaaaccaggtggatgccatt
cgaggcatttcctcggaacagggtgtcgcacacgtattgaattcctccctgaataagacc
gaagtcaaacaggtaaaagacgatatcagtaacggcgtttgcaagttattgtacgttgcg
ccggaatcgctgaccaaagaagattatgtagattttctcagggagcagcaaatttctttc
ctcgcggtagatgaagcccattgtattagtgaatgggggcatgattttagaccggaatac
cgcaatttgaggcaaattatgaaacgaattggcgataatataccagttatcgcgcttacg
gctacggcaactcccaaagttcaggaagacatccttaaaaacctgggaattccaaatgcc
aatactttcaaggcaagtttcaacaggcctaatctgtattacgaagttcgcccgaaaacc
aaaaatgtcgatgccgacattatccggtttgtgaaacaaaatgacgggaaatccgggatc
atttactgcctgagcaggaaaaaagtggaagaattggctcagacccttcaggtaaatggt
gtcaaagccgttccttaccatgccgggcttgatgccaaaaccagaagcaaacaccaggat
atgttcctgatggaagatatcgatgtggtggttgcaaccatcgcgttcgggatgggaatt
gacaagccagatgttcgttttgtgatccatcatgatattccgaaaagtatcgaaagttat
taccaggaaaccggaagagccggtcgtgatggaggagaaggtcactgtctcgcgttttat
tcctataaagacattgaaaaactggaaaaattcatgagcggtaaaccggttgccgaacag
gagatcgggcatgctttgcttcaggaagtggtggcgtatgccgaaacttcggtttccagg
agaaagttcatcctgcattattttggagaagatttcgatgatgttcagggagaaggtgct
gcgatggatgacaacgtcagaaatcccaaaaagaaacatgaagccggcagagatctggaa
ttgctgctgaaggtggtaaaagagaccaaagaactttataaagccaaggaagttgttaaa
acgctgattggtaaaagcaacgcgctgattctttctcataaaaccgatgagcacgcgctc
tttggcgccgggaagaaccaagaaggcaaatactggatggctttagtgagacaggcgctg
gttgctggatttcttcggaaggatattgaaacctacggagtcatcaaattaactccggaa
ggggagaaatttttgaaaaagccagtttctttccagatgactgaggatcatatttttgat
gatagtacagaagactcggctgcttcatcaaaagcccccgcggcggtagacgctcagctg
gtgaaaatgctgaaagagcttcggaaaaaagtggccaagcgaaaagaattgccgcctttc
gttatcttccaggatccctctatcgaagatatggcattgaaatatcctacgagtatcgag
gaactgagcaatattcacggggtaggagaaggaaaggccaaaaaatacggtcaggacttt
gtagatcttatctcccggtatgtggaagataatgatatcacgcgcccagatgacctggtg
gtgaaatctactggagccaatagcggactcaaattattcatcatccagagtgtagatcga
aaattgcctttacctgatatcgcttcggcaaaaggtatggaaatgccggaattcattaag
gaaatggaggccattgtgtatagtggcaccaagctgaacatcaattattatatcgatgag
atccttgatgaagaccagcaggaagagctgcatgaatacttcctcgaggcagaaaccgat
aaaatcgatgaagctatggaagagttcgatggtgattatgaagatgaagaactgcgactt
ttccgtatcaagttcattagtgaagtcgctaattag
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