Gimesia fumaroli: Enr17x_06180
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Entry
Enr17x_06180 CDS
T09837
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gfm
Gimesia fumaroli
Pathway
gfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Enr17x_06180 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfm03019
]
Enr17x_06180 (rne)
03009 Ribosome biogenesis [BR:
gfm03009
]
Enr17x_06180 (rne)
Enzymes [BR:
gfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Enr17x_06180 (rne)
Messenger RNA biogenesis [BR:
gfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Enr17x_06180 (rne)
Ribosome biogenesis [BR:
gfm03009
]
Prokaryotic type
rRNA processing factors
Enr17x_06180 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
DUF6172
Motif
Other DBs
NCBI-ProteinID:
QDV48605
UniProt:
A0A518I6A5
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All DBs
Position
complement(739938..741500)
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AA seq
520 aa
AA seq
DB search
MKKEMLINVLQPEESRIAIVEDGILEELYVERNSLENLVGNIYKGKVVNIEPSIQAAFVD
FGVGRNGFLHVSDIEHQYYKHLTENGDGNGKPGRGKNSKGRRINERSVANKPPIQEILKR
GSEVLVQVIKEGLGNKGPTLSTYISIPGRYLVIMPGLQRVGISRKITDEDVRRQLRTILT
KLAPPPGLGFIVRTAGIDRTADDLKRDLNYLLRLWGTIVGRIKKLPAPVEIYSESDMMIR
TIRDIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRIKHYTGNDPIFYNSDLDDEICS
IQNRHVPMKGGGSIVIDQTEALVAIDVNSGNYRADDNAEKTAFKVNMKAAEEISRQIRLR
DLGGVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLR
RSMYEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNIARLVLNVHETVANYLNNKRRK
DITNLEDTAKTSIIINARTDVEPEHLTARCYDDIGNEVNF
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaaatgctgattaatgtcctccaaccggaggaaagtcgaatcgccatcgta
gaagatggtattctcgaagaactttatgtagaacgaaacagcctcgaaaatctggtaggt
aatatctacaagggaaaagtggtcaatattgaacccagcatccaggctgcgttcgtcgat
tttggtgtcggccgtaacggctttctgcatgtcagtgacatcgaacaccaatactacaaa
cacctcactgaaaacggcgatggaaacggcaaacccgggcggggtaaaaactcaaaaggc
cgtcgcatcaatgaacgcagcgtggccaataaaccgcccattcaggaaatcctgaaacgc
ggcagtgaagtcctggtccaagtcatcaaggaaggtctcggcaacaaaggccctacccta
tcaacctatatcagtatccccggacgctacctggtaattatgcccggtctgcagcgtgtc
ggtatcagtcgcaaaatcaccgacgaagacgtcagacgacaactgcgaacgatcctcacc
aaactggcgccgcctcccggacttggattcatcgtacggaccgccggcattgaccgaacc
gcagatgatctcaagcgcgacttgaactacctgctccgattgtggggcaccattgtcgga
cgtatcaaaaaactacccgctcctgtcgagatatactcagagagcgacatgatgattcgt
acgattcgcgatatctacaacagcgaaatcgatacgctctatattgatgagcccaccgct
tatcaaagagcacgcgattttatgaaagtcgtactccccaaacacgtcaatcgaatcaaa
cattacaccggcaacgatcccattttttataacagcgatctcgatgatgagatctgcagt
attcaaaatcgacacgtcccaatgaaaggcggcggatcgatcgtgatcgaccagacggaa
gctctggtggcaatcgacgtcaacagtggaaactaccgtgccgatgacaatgccgaaaag
accgcgtttaaagtaaatatgaaagcggccgaagaaatcagccgtcagatcagacttcgc
gacctcggcggggtgattgtgatcgactttattgatatgcgcgaagaaaaacaccgccgt
tcagtcgaacgccgattgcgcgaactcgtaaaacgtgaccgcgcccgaaccaaagtcctg
cgtatcagcccctttggcctgatagaaatgacccgccagagaattcgcccctcactccgc
agaagcatgtatgaagattgcccctcctgccgcggaacgggacaagtaaaaacagccgaa
agtatggctatcgaagtcatgcggacgctgatgaccacggtgaataaaaagaatattgcc
cgcctcgtactaaatgtacacgaaactgtcgccaattacctgaataataaacgccgtaaa
gacatcaccaacctggaagatactgctaagacctcaattattattaacgcacgtacagat
gttgaaccagagcatctaaccgcacgttgttatgacgatattggaaatgaagtgaatttc
tag
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