Gimesia fumaroli: Enr17x_14320
Help
Entry
Enr17x_14320 CDS
T09837
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gfm
Gimesia fumaroli
Brite
KEGG Orthology (KO) [BR:
gfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gfm03016
]
Enr17x_14320 (rtcB)
Enzymes [BR:
gfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Enr17x_14320 (rtcB)
Transfer RNA biogenesis [BR:
gfm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Enr17x_14320 (rtcB)
Prokaryotic type
tRNA splicing ligases
Enr17x_14320 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV49415
UniProt:
A0A518I8I5
LinkDB
All DBs
Position
1780930..1782351
Genome browser
AA seq
473 aa
AA seq
DB search
MNSRQLLKIGVPEYCLKTAKTAIQKKVAEENGNGKGSGAGKVRGKALKELVQAVVAQPEA
FLEDLSFRQLALELIEDNREEVFEPIDYQVWGKEGIDEGAFSQMDLACHVPSARGAALMP
DAHLGYGLPIGGVLALEDAVIPYAVGVDIACRMKLSVLDISVDALDQKPHQFVDALNRGT
VFGVGAAHEKRQYHGVMDQDWTVSKVTREKKDRAWKQLGSSGSGNHFVEFGVLTFTEADA
ELGLEAGEYVALLSHSGSRGAGAAVCSTYSSIAQARLHKRHHKLGRLAWLEMDSEAGQEY
WAAMNLMGEYAAANHAVIHQNVSEILGSKVISGVENHHNFAWKEEHDGKEVFVHRKGATP
AAAGELGVIPGSMADPAFVVRGKGNPASLNSASHGAGRCMSRNKAKDKYRWKAVRNDLAK
RGITVISAGADEVPGVYKNIMEVMAEQQDLVDIVARFNPKVVKMCGDGSRAED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaactctcgacagttgctgaaaatcggtgttccagaatactgtttgaagaccgcgaag
acagcgattcagaaaaaagttgccgaagaaaacggaaacggaaaaggttccggtgcaggg
aaggtacgtggtaaagcgttgaaggaactggttcaggctgtggtcgcacagccggaagcg
tttctggaagacctgtcctttcggcagttggctctggagctgattgaagataatcgtgaa
gaagtgtttgagccgatcgattaccaggtttggggtaaagaggggatcgatgaaggtgcg
ttctcgcagatggatttggcgtgccatgttccgtcagcacggggtgccgcattgatgcct
gatgcgcatctgggttatggtctaccgatcggcggagttctggcgttggaagatgcagtg
attccgtatgcggttggtgtggacattgcgtgccgtatgaagttatcggtgctggatatt
tccgttgacgcactagatcagaaaccacatcagttcgtggatgcactgaatcggggaacc
gtatttggcgtgggtgctgcacatgaaaagcgacagtatcatggtgtgatggatcaggac
tggacggtttcaaaagtgacacgcgaaaagaaagaccgtgcctggaagcagctggggtct
tccggttccggtaaccactttgtcgagttcggtgtattgactttcacagaagccgatgcc
gagttgggactggaagcgggcgaatacgtggcgctgctgagccatagtggtagccggggc
gctggtgctgcggtttgcagtacatactcttcaattgcacaggcgcgattgcataaacgc
catcataagctggggcgactggcctggttggaaatggattcggaagcgggccaggaatac
tgggcggcgatgaatctgatgggtgaatatgcggctgcgaaccatgcagtgattcatcag
aatgtttcagaaattctgggaagcaaggtgatttccggtgtggaaaatcatcataacttt
gcctggaaagaagagcatgatggtaaggaagttttcgtacatcgcaagggggcgactcct
gcggcggctggcgaactgggtgtgattcccggttcaatggcggatccggcatttgtggtg
cgtggaaaaggaaatccagccagcttgaattcggcatcgcatggtgcggggcgttgtatg
tctcgtaacaaagcgaaggataaatatcgctggaaagcagttcgcaatgatctggcaaaa
cgcgggattaccgtgatttccgccggcgctgatgaagtgccgggcgtgtataaaaacatc
atggaagtcatggcagaacagcaggatttggtggatattgtcgctcgattcaatccgaag
gtggtgaaaatgtgcggtgacggaagccgtgcagaggattga
DBGET
integrated database retrieval system
