Gimesia fumaroli: Enr17x_48760
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Entry
Enr17x_48760 CDS
T09837
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gfm
Gimesia fumaroli
Pathway
gfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Enr17x_48760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfm03400
]
Enr17x_48760 (mfd)
Enzymes [BR:
gfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Enr17x_48760 (mfd)
DNA repair and recombination proteins [BR:
gfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Enr17x_48760 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDV52807
UniProt:
A0A518II91
LinkDB
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Position
complement(6162314..6165655)
Genome browser
AA seq
1113 aa
AA seq
DB search
MTKPIDSQIQSMQDLVPVLSRSEGFAAVVAALQSGQSGTIDGAWGGSCALTAATIAETVK
SPVLIVLPRLGEIDEFSGDLTSFLGRSPDLFPAWETLPDEHDVADSVFGGRLRVLNQLVP
LDQNADSIPPVIVTSFPALLQPVPSRQKRREATRRIRVGDEIDTDPFMSWLIERGFERTT
AIELPGEFSMHGGILDIFSPDATLPLRIEFFGDEVESIRQFDVETQRTVETCESVDLTLI
SPVSAAEEHSQGRTLARDLDESASESLLDNLPKNTCIVLVELPELVDEGRRYLDRLENPR
GLFSVPAMMSRCTDFPSVTIAPISAESTEISCHLQIESIERFTRAKSEMIEELASITGPH
DRVVVCCHNQGEEDRLREILNESELEISGRVTTCIGNLALGFRIVSEHLVVLSDHELFGR
ADIRHKPRKRKVESRAIDNFLDLNVGDFVVHLSHGIARFKGLELLEKDGCREEHLSLEFR
DKVQMYVPVSLVHLVQKYIGGGKHIPQLSKLGGKSWANKKEKAAQAVRDMASDMLRMQAM
RSAQPGIAYPPDSHWQKEFEASFPYTETTDQLHAINDIRHDMERPQPMDRLICGDVGYGK
TEVAIRAAFKAIDSGKQVAVLVPTTVLAEQHTRTFSERMADYPITIEGLSRFKTKKEQRK
TLEGMASGSVDLVIGTHRLIQKDIKFKDLGLLIIDEEQRFGVEAKEMLKSLRLQIDVLTL
SATPVPRTLHMSLLGIRDISNLTTAPRDRVPIETRISRFDPELIRHAMVRELNRNGQVYF
VHNRVHDLQKYADRIQQIVPEATIGIGHGQMKESELEAAMYDFVSGRVDIFVCTTIIESG
LDIPNANTMFIHDAGNHGLSDLHQLRGRVGRSHHRAYCYLLLRDGQILTPVAAKRLKAIE
EYSELGAGFKIAMRDLEIRGAGNILGTEQSGHISAVGYELYCQLLENACKRLKNEPLREH
HHVAIDLPCTAYLPSDYIPPGRIKIEMYRRLSAIRSLDELADLETEFEDRFGNIPHPVRQ
LLILKELQILAQQWQVDSIRLEENFAVLGYRDKNHILALAKSNQNRIPVRIVDHKSAYIP
LPVSAVDVETIMLELKSVLQQSFDPTYNLAPSS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaccaatcgacagtcagattcagtcgatgcaggatctggttcccgttttaagc
cgaagcgaaggattcgccgctgtggttgcggctctccagtcaggtcaaagcgggacaatt
gatggagcctggggaggatcgtgcgcgctgactgcagcgacgattgcagaaacagtgaaa
tctcctgttttaatcgtccttcctcgcctgggagaaatcgacgaattcagtggcgacctt
accagttttctgggaagaagcccggatctgttccctgcttgggaaaccttacctgacgaa
catgatgtcgcggactcggtttttggtggtcgcctgagggtactgaatcaactggtacca
ctcgatcagaatgcggatagtatcccgccggtgattgtgacttcgtttcccgctttactg
cagcctgttcccagtcgtcaaaaacgtcgcgaagcaactcgcaggattcgggtgggggat
gaaattgacacagatcccttcatgagttggcttatcgagcgtggattcgaacggacaacg
gcaattgaactgccgggcgaattcagtatgcatggcggcattctggatattttctctccc
gatgccacgcttcctctgcgaattgaattttttggcgacgaagtcgagtcgatcagacag
tttgatgtggaaacacagagaactgtcgagacttgcgaatcggttgatctaacgctgatt
tccccggtctccgcggctgaggaacattcgcaaggacgtacgctagccagggatctggat
gagtccgcttcggaaagcctgctggacaatttaccgaagaatacctgtattgttctagtg
gaactcccagaactggttgatgaaggcagacgatatctggaccggctcgaaaatccgcga
ggattattcagtgtgcccgcgatgatgtcccgctgcaccgattttccatccgtaacgatc
gcgcccatttctgctgaatcaacagagatctcttgccatttacagattgaatcgattgag
cgttttacgcgcgcgaagtcagaaatgattgaagaactggcttcgatcaccggtcctcat
gatcgcgttgtcgtctgttgtcataaccagggcgaagaagatcggctgcgtgagatcctg
aatgagtctgagctggaaatcagcggccgcgtgacaacctgtattgggaatctggctttg
ggctttcggattgtttccgaacatctggtcgtgttaagtgatcatgagctctttggccgc
gctgatatccgacacaagccgcgcaagcgaaaagtcgaaagccgggccatcgacaatttt
ctcgatttgaatgtgggcgattttgtcgtacatctctcacacggcattgcccgtttcaaa
ggtttggagctcctcgagaaggatggctgtcgcgaagaacatctctctttggagtttcgt
gataaagtgcaaatgtatgtgccggtctctctggttcatcttgtgcaaaaatatatcggg
ggtggaaaacacattcctcaactgtccaagttgggggggaaaagctgggcgaacaaaaag
gaaaaagcggcgcaggccgtcagggatatggccagcgatatgttacgcatgcaggctatg
cgttcggctcaaccaggcatcgcttatcctcccgacagtcactggcaaaaagaatttgaa
gcttcgtttccctatacagaaaccaccgatcaactgcatgccatcaatgatattcgacat
gatatggagcgacctcaacccatggatcgtttgatctgcggtgacgttggttatggtaaa
accgaggttgcgatccgtgctgcttttaaagccatcgattcaggaaagcaggttgccgtg
ctggtccccacaacggttctggccgagcagcatacgcggaccttcagcgagcggatggcc
gattatccaatcaccattgaaggtctctcgcgtttcaaaacaaaaaaggaacagcgaaag
acactggaaggcatggcctcgggtagtgtcgatctggtgatcggcacacatcgcttgatt
cagaaagatatcaaatttaaagatctaggtctgctgattattgatgaggaacagcggttt
ggtgtggaagcaaaagaaatgctgaagtccctcagactgcagattgatgtgctcaccctg
agcgcgactccggtgccgcggactctgcatatgtcgttattggggatacgcgatatttcc
aacttgaccacagcgccccgtgatcgcgttccgatcgaaacacgcatctcccgctttgat
cccgaactgatccggcatgcgatggtgcgcgaattgaatcgaaacgggcaggtttatttt
gtgcataaccgggtccacgatttacagaagtatgcagaccggattcagcaaattgttcct
gaagccacgatcgggatcgggcatgggcagatgaaagaatccgaactcgaagcggccatg
tacgacttcgtatccggtcgagttgatatctttgtctgcaccaccatcattgagagcggg
ctggatataccgaatgccaataccatgttcattcacgatgccggcaatcatggactttcg
gatctgcaccaactccgcggacgtgtggggaggtcgcatcatcgggcctattgttatctg
ctgttacgcgatgggcagatactgacgcctgtggctgcgaaacggcttaaagcgattgaa
gaatacagcgagctgggggccgggtttaaaatcgcgatgcgcgacctggaaattcgaggg
gccgggaatatcctgggaaccgagcaaagtggccatatttccgcagttgggtatgaactg
tattgccaactgctggaaaatgcctgtaaaagactgaaaaacgagcccctgcgggaacac
catcacgtcgccatcgatctgccttgtaccgcctacctgccttcggattatatcccccct
ggccgcatcaaaattgaaatgtatcggcggttatccgcgattcgttctctggatgaattg
gcggatctggagacagaattcgaggatcgcttcgggaatattccccaccctgtgcgacaa
ttattgattttgaaagaattacaaatcctggcacagcagtggcaggtagatagtattcgc
ctggaagaaaacttcgctgttttaggctatcgggacaaaaatcatatcctggcactggca
aaaagcaatcagaatcggattccagttcgcattgtagatcataaatcggcgtacataccg
ttgccggtttctgccgttgatgtggaaacaatcatgttagagctcaaatcggtattgcaa
caaagttttgatccgacctataatctcgcaccatcatcctga
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