Gimesia fumaroli: Enr17x_54340
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Entry
Enr17x_54340 CDS
T09837
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gfm
Gimesia fumaroli
Brite
KEGG Orthology (KO) [BR:
gfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfm03019
]
Enr17x_54340 (hrpB)
Enzymes [BR:
gfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Enr17x_54340 (hrpB)
Messenger RNA biogenesis [BR:
gfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Enr17x_54340 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
ABC_tran
nSTAND3
AAA_25
FtsK_SpoIIIE
AAA_19
RsgA_GTPase
T2SSE
TssR_VWA
Cas3-like_C_2
SLFN-g3_helicase
AAA_29
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
QDV53360
UniProt:
A0A518IJV6
LinkDB
All DBs
Position
complement(6889848..6893837)
Genome browser
AA seq
1329 aa
AA seq
DB search
MSRGELNSAAADAGAASESLPAALSELPALISQAMVGDQFRLSQRLRSIQQAKKNKKPFD
RNLKRLQDELEKSLARREERLKLRPEVTFDQSLPIHEELETIQQTIEENQVVIVCGETGS
GKSTQLPKLLLSMGRGISGIIGHTQPRRIAARSVCARISEELGREQGTACGFKIRFTDTT
NPNTYIKLMTDGILLAETQTDRFLNQYDTIIIDEAHERSLNIDFLLGYLKRLLPKRRDLR
VIITSATIDAERFSEHFSTREKLAPILNVSGRTYPVEIRYRPLDAEPTEKTQGKSQNNGA
DEQSLLADAVNELASIDEGDILIFVPTEWDIRETAKLLRGRSIIDDDGRRQTEIVPLYGR
LSTAEQNKVFRPSSYRRIVIATNVAESSITVPGIRYVIDTGLARISRYSSRSQVQRLPIE
AVSQASANQRAGRCGRVAPGICIRLYSEADYNGRDEFTSPEILRTNLASVILQTLNMKLG
SIEEFPFIDPPKPAAIRDGYSTLFELGAIDEQNRLTDIGRKISRLPVDPRIARMILAAHD
ENCLHEILIIAAALELQDPRERPIDKQQAADEAHEQFRDEDSDFLSFLKLWDFYHKLKED
LSHSRLRKACVQNFLSYNRLREWADIFRQLRQLVEETGLKPHPRKDDSAAIHRALLPGLL
SNIAMRSDTNEYTGSGQQKYFIWPGSGIFEKKPKWVISAELIETSKRYARTVAKISPNWI
EPAAPHLVKKSWSDPRWSGDAGSAMATEKVTLFGLTIVPRRPVHYGKIDPEQSRTLMLQY
GLVEGDINLKIDFLSHNQKFLSDLEQQQARSRRYDLIPSQELQFAFYDQRIPEDVYDAVS
LKKWWKVASRKTPTLLNMRLEDFFETQAEDVDESEFPNAINLGKMQFPLEYHLEPGAEED
GVTVSIPQESLNQLSPQRLGWLVPGLLEEKVAAMIKSLPKSVRRMLVPAPETARQVVSKL
EFGKGSFEETVAEMLSQISGERITADQFEIQRLPQHLQMNIRVLDQEGEAIAVNRNLTQL
RQEYGSKAADSFSALSNDHWSQTGLTDWTFGEFPTEVQIQHDQLSLTGFPSLLDEGTTVA
LCLRDAPERAAYETRFGLRRLFILSEHRRLKTQIDNLPGLNRMSLYVTAIGGINLREQLI
ELLAERTLFGQKERLPRNETQYRLLVKEWRNQIPVAAQDLASLLPDLFEQYHKIKVTLDK
TKVPAWSEPLHDMRTQLNAMINARFLVSTPYPWLQQFPRYLQGIELRLSKLGGTGLKKDI
SNIRGISRYFELYSQRARQHYEREIIDPQLIKFRWMLEEYRVSLFAQKLGTALKVSPKIL
DQQWAVVRD
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtggtgaattgaattcggctgctgctgacgctggtgccgccagtgagagcttg
cccgctgcgctgtcggaactgccggcgctgatttctcaagcgatggtcggcgatcagttt
cggctgtcacaacggctgcggtcgattcagcaggcgaagaaaaacaaaaagcccttcgat
agaaatctcaagcgattgcaggacgagttggagaaatccctggcccggcgggaagaacgg
ctcaagctgcggccggaagtcacgtttgaccagagcctgccgattcatgaagagctggaa
acgatccagcagacgattgaagagaatcaggtcgtcatcgtctgtggggaaacggggtca
gggaaatcgacgcagcttcccaagctcttgctctcaatgggacgcggcatcagcggcatc
attggtcacacgcagccccgtcggattgccgcccgctcagtttgtgcccgcatctcggaa
gaactgggacgcgaacagggaaccgcctgcggattcaaaattcgtttcaccgatacgacc
aaccccaacacctatatcaaactgatgaccgacggcatcctgctggccgagacacagacc
gaccggtttctgaatcagtacgacacgatcatcatcgatgaagctcacgaacgctcgttg
aacattgactttctgctgggctacctcaaacgcctactccccaaacgccgggacctgcgg
gtgattatcacctcggcgacgatcgacgcggaacgcttcagcgaacacttttcgacccgc
gaaaagctggccccgatcctgaacgtctcggggcggacgtatccggtcgagattcgttat
cggcccctggatgcagagccgacggagaaaacgcaaggcaagtcacagaacaacggggcc
gacgagcagtcgctgctggcggatgcggttaacgagctggcgtccattgacgagggtgac
attctgatttttgtgcccaccgaatgggacattcgcgagaccgccaaactgctgcgggga
cgatccatcatcgacgacgacggcagacggcagacggagatcgtgcccctctacggacgg
ctgtcgacggcagaacagaacaaggtctttcggccttcttcctatcggcggattgtgatc
gcgaccaatgtggccgagtcatcgattaccgtgcccggcatccgttatgtgattgatacg
gggctggcacgcatcagccgttattcgagtcggtcacaggttcagcgtctaccgattgaa
gcagtatcgcaggcctccgccaatcagcgggccggtcgctgtggtcgtgtggcaccgggg
atctgtattcgcctttatagtgaagccgactataacggccgcgatgaattcacgtcaccg
gaaattttgcgaacgaatttggcgtcggtcattctgcagacattgaatatgaaactgggg
tccattgaagagttcccgtttatcgatccacccaagccggcggcgatccgcgacggttac
agcacactgtttgagttaggtgcgattgacgaacagaatcggctgacggacatcggtcgc
aagatcagtcggctgccggtcgacccgcgcattgcgcgcatgattctggcggcacacgat
gaaaactgtctgcacgaaattctgattatcgcggctgccctcgaactgcaggacccgcgg
gaacgaccaattgacaaacagcaggccgccgacgaagcccacgaacagtttcgcgacgaa
gattctgacttcctcagcttcctcaaactatgggacttctatcataagttgaaagaagat
ctctcacacagccgcctgcggaaggcgtgcgtgcagaactttctgtcgtacaatcgactg
cgggaatgggccgacatctttcggcaactgcgacaactggtggaagagacggggctgaag
ccgcacccgcggaaagacgattcagcggccatccaccgcgcgctgctgccgggcttgctc
tcgaacattgccatgcggtcggacacgaatgaatatacggggtcggggcaacagaagtat
tttatctggcccggttcgggaattttcgaaaagaagccgaagtgggttatctcggcggag
ttgattgaaacgagcaaacgctacgcacgcacggttgcgaagatatcgccgaactggatc
gagccagcggctccacacctggtgaaaaaaagctggagcgatccccgctggagcggtgat
gcgggctcggcgatggcgacggaaaaggtcacgctgttcggtttgacgattgtccctcgc
cgccccgtgcattatggcaagatcgatcccgaacaatcgcgaacactgatgctgcagtat
ggacttgtggaaggggacatcaatcttaagatcgatttcctgtcgcacaatcagaaattc
ctcagtgatctcgaacagcagcaggcccgttcgcggcgctacgatttgataccgtcacag
gaactgcagtttgcattttacgatcagcggattcccgaagacgtctacgatgcggtgagc
ctgaagaagtggtggaaagtcgccagccgcaaaacaccgacgctgctcaatatgcgactc
gaagacttcttcgaaacgcaggcggaagacgttgacgaaagcgaattcccaaacgcgatc
aatttaggcaagatgcagttcccgctcgaatatcatctggaaccgggtgcagaagaagac
ggcgtgacggtttcgatcccacaggagagcttgaatcagctttccccccaacggctgggc
tggctggtgccgggccttttggaagaaaaagtggcagcgatgatcaagtcgctgcccaag
tcggtacggcggatgctggtgccggcaccggaaacggcacggcaggtcgtcagcaagctg
gagttcggcaagggatcatttgaagaaacggtcgccgagatgctgtcgcagatttcgggc
gagcggatcaccgcagatcagtttgagattcaacggctgccgcaacatttgcagatgaat
attcgcgtgctcgatcaggagggagaggcgatcgccgtgaatcggaacctgacacagttg
cgacaggagtacggttccaaagccgccgacagtttttcggcactttcgaacgatcactgg
agtcaaacgggactaaccgactggacgttcggcgaatttccgaccgaggtccagatacag
cacgatcagctctcgctcaccgggtttccgagtctgctggatgaaggcacaacggtcgcg
ctctgtctgcgcgacgcgcccgaacgggccgcatatgaaacacggtttggtttaaggcgg
ctgtttattctgtcggaacatcgtcgtttaaaaacacaaattgacaatttgcccggattg
aaccggatgtcgttgtacgtgacggccattggtggaatcaatttgcgggagcaactcatc
gaactcttggccgaacggacgctgtttggtcaaaaggaacggttgcctcggaatgaaacg
cagtatcgtctactggtaaaagagtggcgaaatcagattccggtcgccgcccaggatttg
gcgagtctcctgccggatttgttcgagcagtatcacaagatcaaggtgacactggataaa
actaaagtgcctgcctggagtgagccgctgcatgacatgcggacgcagttaaacgcgatg
atcaacgcccggtttctggtgagcacgccttacccctggttgcagcagttcccgcggtac
ctgcaggggattgagctgcggttgagcaaacttggtggcaccgggttgaaaaaagacatc
agcaatatccgtggtatctcacggtatttcgaactctattcccagcgggcccgtcagcat
tacgaacgggaaattattgatccacagttgatcaagttccgctggatgctggaagagtat
cgtgtgtctctgtttgctcagaaactggggacggctttgaaagtttctccgaaaattctg
gatcagcagtgggcggtagtgcgggactga
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integrated database retrieval system
