Christiangramia forsetii: GFO_0140
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Entry
GFO_0140 CDS
T00448
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03030
DNA replication
gfo03410
Base excision repair
gfo03420
Nucleotide excision repair
gfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFO_0140 (polA)
03410 Base excision repair
GFO_0140 (polA)
03420 Nucleotide excision repair
GFO_0140 (polA)
03440 Homologous recombination
GFO_0140 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfo03032
]
GFO_0140 (polA)
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_0140 (polA)
Enzymes [BR:
gfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GFO_0140 (polA)
DNA replication proteins [BR:
gfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFO_0140 (polA)
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GFO_0140 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFO_0140 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
NYN_YacP
HHH
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
CAL65129
UniProt:
A0LXN4
LinkDB
All DBs
Position
complement(168548..171376)
Genome browser
AA seq
942 aa
AA seq
DB search
MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGFNTSAIMGFTNSLFDVIRREKPDHLAV
CFDKDGSKERTEMFAEYKANRDETPEPIREAIPIIQDILKAMHIPVVECAGMEADDIIGT
LAKQAEKENYKVYMVTPDKDFAQLVSENIFMYRPARMGNGIEIWGIPEVQKKFEVERPEQ
VIDFLGMMGDSVDNIPGLPGVGEKTAKKFLKKYGSMEALLENTDDLKGKMKEKVIENAEL
GRLSKKLATIFIDCDVKFHAEDYELSMPDGDKVQEIFEELEFRRLKDQFIKLFSGEEETK
QTQVSNSPSAKKNAQATAGAGQFSLFGGDGEEIERTSSRTNLSDTPHFYQSLNTEMARKI
FIEKLLKQKSVCFDTETTSLNTLDAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRN
FFENDKIEKIGQNLKYDIKVLDKYKIDVKGALFDTMIAHYLINPDMRHNMDVLAETYLNY
TPQPISELIGKKGKNQGSMRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNE
IEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEEFLISSPKQLGI
ILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDYRGLVKLQNTYVDALPNQ
VERTTGRVHTDYVQTTAATGRLSSNNPNLQNIPIRTERGKQVRKAFVPRDENYVLLAADY
SQIELRIIAALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIY
GVSAFGLSNQTSLSRSESKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLK
DINSRNAIVRGAAERNAVNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVF
DAHKDELEKVQKMIKSEMENAYKLEVPLDVDLGVGKNWLEAH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcaaaaacgcctttttttactcgacgcatacgctctaattttccgcggatat
tacgcttttatcaagaacccgaggatcaattccaagggattcaatacctccgcgatcatg
ggttttaccaattctctttttgatgtgataagaagagaaaaacccgatcatctggcagta
tgtttcgataaagacggtagcaaggaaagaacggaaatgtttgctgaatataaagcgaac
agggatgaaaccccggaacctattcgagaggctattccaattattcaggatattttaaaa
gcgatgcatattcccgtggtagaatgcgccggaatggaggccgatgatattattggaact
ctggccaaacaggccgaaaaggagaattataaggtttatatggttactcctgataaggat
tttgcacaattggtttctgaaaatatctttatgtatcgccctgcaagaatgggtaacgga
atagagatttggggaattcccgaagttcagaagaaatttgaagtagaaagacccgagcag
gtaatcgatttccttggaatgatgggagattctgtagataatattccgggacttccggga
gtgggtgaaaaaactgccaaaaaattcctcaagaaatacggcagtatggaagccctactt
gaaaataccgatgacctgaaagggaaaatgaaggagaaggtgatcgaaaatgctgaatta
gggcgtttatctaaaaaactggcgacgatcttcattgattgtgatgtgaaatttcatgca
gaggattacgaactttccatgcccgacggggataaagttcaggagatatttgaagaatta
gaattcagaagattaaaagatcagtttataaaattatttagcggagaagaagaaacaaaa
caaacccaggtctcgaattcaccttcagctaaaaagaatgcgcaggcaactgccggagcg
ggacaattctccttatttggtggagatggcgaagagattgagagaacttcttccagaact
aatctttcagatacgccacatttctatcagtcattgaatactgaaatggctagaaagatc
tttattgaaaaacttctgaaacaaaagagcgtttgtttcgatacagaaacaaccagtttg
aatactctggatgctgaattggtaggaattgctttctcctgggaagccggaaaaggtttt
tatttgccgtttcctgaagaaaaaaaagaagcccaaaaactcatagaagaactcagaaat
ttctttgaaaacgataaaattgaaaagatcggccaaaacctgaaatatgatattaaagtt
ctggacaaatataagatcgacgtaaaaggtgcattatttgataccatgatcgcgcattat
cttattaatccggatatgcgtcataatatggatgtgctggcggaaacataccttaattat
actccgcagcccatttcagaattgatcggtaaaaaaggtaaaaatcagggtagcatgaga
gatgtggcattggataaacaaaccgagtatgccgttgaagatgccgatatcacttttcag
cttaaaaacctttttgaaaaagaactggaggaagctgaaaccaggaaactttttaatgag
attgaaattccgctagtagaagttcttgccgatatggaactggaaggaattaaactggat
gaagaatatttaaagtcattatctgaagcgctggcttcagacattaaagatctcgagacc
aaaatttatgaagctgcaggtgaagaatttttaattagttccccaaaacagctgggaatc
attctgtttgagaaaatggaattatctaaaaaacccaagaaaaccaagaccgggcaatat
tccaccagtgaagatgtactttcaagtttagctgaagaaaatgatattgttcaacatgtt
ctggattaccgcggacttgttaaacttcagaatacttatgtagatgcactcccgaatcag
gtagagagaacaacgggtagagtacatacagattatgtacaaaccactgcagcaacggga
agattgagttcaaacaatccaaaccttcagaatatccctattagaacagaaagaggaaaa
caggttagaaaagcatttgtgcccagggatgagaattatgtgctgcttgctgccgattat
tcccagatagaactaaggatcattgccgctttgagtaatgaagagaatatgatccaagcg
tttaaggatggagaagatattcatgcatctactgctgcaaaggttttcaacgtgccgttg
gaagaagtgacccgagagcaaagaagcaatgcgaaaactgtaaatttcgggatcatttat
ggagtttccgcttttggactaagcaatcaaacgtcactttccagaagtgaatcgaaagaa
ctcatcgatacttattataaaacatatccaaaacttagtaatttcattgcagatcaggtg
gaatttgccagggaaaacggtcacgtatctaccgttttgggaagacgtcgctatttaaaa
gatattaattccagaaatgccattgtgagaggtgcagctgaacgcaacgccgtgaatgct
cctattcagggaagtgctgccgatatcatcaaactggcgatgatcaatattcataaaaaa
ctgaaggaagaaaattataaaactaaaatgctacttcaggtacatgatgaactggtattt
gatgctcataaagatgaattggaaaaagttcagaaaatgataaaatctgaaatggagaac
gcttataaactggaagttcctttagatgtagatcttggggttggcaaaaactggctggaa
gcgcattaa
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