Christiangramia forsetii: GFO_0380
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Entry
GFO_0380 CDS
T00448
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFO_0380 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfo03019
]
GFO_0380 (pnpA)
03016 Transfer RNA biogenesis [BR:
gfo03016
]
GFO_0380 (pnpA)
Enzymes [BR:
gfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GFO_0380 (pnpA)
Messenger RNA biogenesis [BR:
gfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GFO_0380 (pnpA)
Transfer RNA biogenesis [BR:
gfo03016
]
Prokaryotic type
tRNA degradation factors
GFO_0380 (pnpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
CAL65365
UniProt:
A0LYC0
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All DBs
Position
complement(442367..444619)
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AA seq
750 aa
AA seq
DB search
MIPKTFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQKDLPFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLMS
HDDEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMMI
GASADSVMMVEGEMDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAPE
NEDLVKKVHDMAYDKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELEEYGDLVSDYY
RKAEKAAVRDLTLNEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLG
TSRDANQIDMPSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIPE
ECPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGKYAV
LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKL
TDTIAQPNADVKAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEE
GIIEILGTEQEGIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEVLLH
ISELAWERTNDVNDVLKLGDVLDVKYFGLDPKTRKDKVSRKALMEKPEGYKERAPRDRDD
KRGSRDNNRGRDNRGRDNRRDDRKPRENKD
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaaacatttaaggaggttatcgatcttggagatggaagagaaatctcgatc
gaaaccggaaaattagcaaaacaagctcacggtagcgttgtagtgcaatcaggaaaatgt
atgttgctttgtaccgtagtttccaactacgaacaaaaagatttacctttcttaccatta
acggtagattatcgcgaaaaatttgcagcagctggtcgttatcccggtggtttcttcaaa
agagaagcaagaccaagtgatggcgaagtattaaccatgcgtttagtagatcgcgtttta
cgtccattattcccgaaagattatagcgcagaaacgcaggtaatgatccaattgatgtct
catgatgatgaggtgatgccagaagctatggctggtttagcagcttctgcagccattcaa
ctttcagactttccatttgaatgcgcaatttctgaagctagagttggtcgtgttaatggt
gagtttatcatcaacccaactagagcgcaattagctgaatcagacatcgaaatgatgatt
ggtgcctctgcagattctgtaatgatggtagaaggtgaaatggacgagatttctgaagag
gacatggtagaagccattaagttcgctcatgaagctattaaggttcaaattgaagcacaa
catcgtttagccgatgctttcggtagaaaagaagttcgtgaatatgaagatgctcctgaa
aatgaagatttagtgaaaaaggtgcacgatatggcttatgataaagtctatgctgtggca
aaagcgggttcatctaaaaaagagcgtactgatgcatttgcgagcattaaagaagaagta
aaagcatcattctctgaagaagaattagaagaatatggcgacttagtgtctgactactac
agaaaagctgaaaaagctgccgttcgcgaccttacacttaatgaaggtattcgtttagat
ggccgtaagactgacgaggttcgtgacatctggtgtgaagtagattatttaccatcggtt
catgggtcttcgatttttacacgtggcgaaactcaagccttagctactgtaactttggga
acttcaagagatgcaaaccaaatagatatgccatcacacgaaggtgaagagcgtttctat
ttacattataacttccctcctttttgtacaggtgaagccagaccaattcgtggtacttcc
cgtcgtgaagtaggtcacggtaacctggcgcaacgtgcactaaaaggaatgattccagag
gaatgcccttatactgtaagagtagtttctgaagtattagaatctaacggttcttcttct
atggcaactgtttgtgcaggtacaatggcattgatggatgcaggggttcaaatgaaaaaa
ccagtttctggaattgcaatgggattaatttctgatggtgactccggaaaatatgcagtt
ttatctgacattttaggtgatgaagatcatttaggtgatatggactttaaagtcacaggt
actgccgatgggattaccgcttgccaaatggacatcaaagttaaaggattatcttacgaa
atcttagtgaatgccttgaaacaagcgcgtgacggaagattacatatcttagagaaattg
accgatactatcgctcaacctaatgcagacgtgaaagcatacgcacccaaaatgattacc
agaagaattcctaatgaattcatcggtgcattgattggacctggaggaaaagtgattcaa
gaattacaaaaagaaaccggaacaactattgtaattaatgaagatccggtaactgaagaa
ggaattatagaaattcttggaactgagcaggaaggaattgataaggttatcgctaagata
gaatctatcacttttaagccagaaaaaggaagtgtttacgaagtaaaagtgatcaaagtt
cttgattttggtgctgtggtagaatatatggatgctccggggaacgaagtattacttcat
atttctgaattagcatgggaacgtaccaatgatgtgaacgatgttcttaaattaggtgat
gtactagatgttaagtattttggtcttgatcctaaaacaagaaaagataaagtttctaga
aaagctttgatggaaaaacctgaaggttataaagaaagagctcctagagacagagatgac
aaacgtggatctcgcgataataatcgtggtagagataaccgtggtcgcgataatcgtcgt
gacgatagaaaaccaagagagaataaagactaa
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