Christiangramia forsetii: GFO_0422
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Entry
GFO_0422 CDS
T00448
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gfo
Christiangramia forsetii
Pathway
gfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFO_0422 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfo03021
]
GFO_0422 (rho)
03019 Messenger RNA biogenesis [BR:
gfo03019
]
GFO_0422 (rho)
Transcription machinery [BR:
gfo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GFO_0422 (rho)
Messenger RNA biogenesis [BR:
gfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GFO_0422 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
DDHD
AAA_22
Spore_III_AA
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
CAL65406
UniProt:
A0LYG1
LinkDB
All DBs
Position
complement(496628..498301)
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AA seq
557 aa
AA seq
DB search
MFEISELKAKKLPELKEIAQTLNVPKYKTLKKLDLVYQILDYQASNPTKVKEVITDKKEE
PPKEKPKRPAKVGSEKKPPRQSSNTSTKPTQAKPSGKDSSSHPSQKDDKKNTAPDKSSRD
RNQNTKKDSRGRNDNRKESRNDNRNENRSDNRNDNRNDNRNDNRNDHKKNNGNRDNRNRY
REPDYEFDAIIESEGVLDIMQDNYGFLRSSDYNYLTSPDDIYVSQSQIRLFGLKTGDTVQ
GQIRPPKEGEKYFPLIKINKINGLDPQVVRDRVSFEHLTPLFPKDKFNLAEKQSSISTRV
MDLFAPIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIVLLIDERPEEVTDMQR
NVKGEVVASTFDKEAHEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPAS
GKVLSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNM
ELQLDRRISNRRIFPAIDLVSSSTRRDDLLLDDTTIQRMWVLRKYLADMNPIEAMEFIND
KIRNTRNNEEFLISMNG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagaattaaaggctaaaaagcttcctgaacttaaggaaatagctcaa
acgcttaacgttccaaagtataagactttgaaaaaactagatttggtgtatcagattctg
gattaccaggcatccaatcctacgaaagtaaaagaagttatcaccgataagaaagaggaa
ccgcccaaggaaaaacctaaaagaccagcaaaggttggtagtgagaagaaaccaccaagg
caatcttccaacactagcacaaaacctactcaagctaaaccttcaggtaaagattcatct
tctcatccttctcaaaaagatgataaaaagaatactgctccagataaaagcagtagagac
aggaatcaaaacactaaaaaagatagtcgcggcagaaacgataaccgaaaggaaagtcgc
aatgacaatcgcaacgaaaatcgtagtgacaatcgcaacgataacagaaatgataatcgt
aacgataaccgcaacgatcataaaaaaaataacgggaatcgcgataacagaaaccgttac
cgcgaaccagattatgaatttgatgcgatcatagaaagtgaaggagtactggatattatg
caggacaactacggtttcctaaggtcttcagactataactaccttacttctccagatgac
atttatgtatcacaatcacagatcaggctttttggccttaagacaggtgatacggttcag
ggacaaattagaccacctaaagaaggtgagaaatattttcctcttattaagataaataaa
attaacggacttgatccgcaggttgtaagagatcgtgtttcttttgaacaccttacaccg
cttttccctaaggataaatttaaccttgctgaaaagcaaagttcaatttctaccagggtt
atggatcttttcgctcctatcggaaaagggcaacgtggaatgatcgtttctcagccgaag
acaggtaagacgatgttacttaaagatatcgccaatgctattgcagcgaatcatcctgaa
gtttatcaaattgtactgcttatcgatgagagacctgaagaggttaccgatatgcaacgt
aacgtaaaaggtgaagtagtggcttcaacttttgataaagaagctcatgagcacgtgaga
gttgcgaatatcgtactcgaaaaagccaagcgattggtagaatgtggtcacgatgtggta
attcttctcgattctattacaagacttgcaagagcttataacaccgttcagccagccagt
ggtaaagtattaagtggtggtgtagatgctaatgctcttcacaaacctaaaagattcttt
ggtgctgcccgtaatattgagaacggaggttcgttatctattatagctaccgcacttact
gaaaccggttctaagatggatgaagtgatctttgaagaattcaaaggaacagggaacatg
gaacttcagttagatagaagaatttctaaccgaagaatattcccggcaattgatcttgtt
tcttcaagtacacgtagagatgatcttttacttgatgataccacgattcaacgtatgtgg
gtattaagaaaatatcttgcagatatgaatcctattgaagcaatggaattcattaatgat
aaaattaggaatactagaaataacgaagagtttttaatctccatgaatggttaa
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