Christiangramia forsetii: GFO_0592
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Entry
GFO_0592 CDS
T00448
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFO_0592 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfo03019
]
GFO_0592 (recQ)
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_0592 (recQ)
Enzymes [BR:
gfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFO_0592 (recQ)
Messenger RNA biogenesis [BR:
gfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFO_0592 (recQ)
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GFO_0592 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
CAL65575
UniProt:
A0LYY0
LinkDB
All DBs
Position
660123..662321
Genome browser
AA seq
732 aa
AA seq
DB search
MGLTEIDLHKELKRYFGFSQFKGLQEEVITSIVNGKDTFVVMPTGGGKSLCYQLPALISD
GTAIVVSPLIALMKNQVDAIRSISSEHGVAHVLNSSLNKTEVKQVKDDISNGICKLLYVA
PESLTKEDYVDFLKNQTIAFLAVDEAHCISEWGHDFRPEYRNLRNILKRIGDNIPVIGLT
ATATPKVQEDILKNLGITDAKTFKASFNRPNLYYEVRPKTKNIEADITRFVKQNDGKSGI
IYCLSRKKVEELAQTLQVNGIKAVPYHAGLDAKKRSKHQDMFLMEDIDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSVSRRKFILHYFGEEFSSETGDGADMDDNVRYPKKQVEAKEDLE
LLLRMVKETNELYKSKEVVKTLIGKSNALILSHKTDEHPLFGKGSHQESNYWMALTRQAL
VSGFLKKDIETYGVVKITEKGRNYLQNPVSYMMTEDHIYNAATEEAVTKADKGGASVDAQ
LVKMLKELRKKVAKKKDLPPFVIFQDPSLEDMALKYPVNIDELSNIHGVGEGKAKKYGNE
FVELIARYVEDNDIVRPDDFVVKSTGANSSLKLYIIQNVDRKLPLTDIASAKGMSMPDFV
KEMEAIVYSGTKLNIDYWLDDILDEDQQEEIHDYFLEAETDKIDEAMEEFDGDYDDEELR
LYRIKFISQVAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgaccgaaattgatttacacaaagaacttaagaggtactttggatttagtcag
tttaaggggcttcaggaagaagtgattaccagtatcgtgaatggaaaagacacgtttgtg
gtaatgccaactggcggaggtaaatcactatgttaccaactccctgcgcttatatcagac
ggtactgctattgtagtatcgccccttatagctttaatgaagaatcaggtagatgctata
cgtagtatttcctcagaacatggcgtggctcatgttctcaactcctctttaaataaaact
gaagttaaacaggtaaaggatgatatcagtaatggtatctgtaaattgctttatgtagct
ccggaatcacttaccaaggaagattatgtcgattttcttaaaaatcagactattgctttt
cttgccgtagatgaggctcactgtatcagtgaatgggggcatgactttagacctgaatac
cgaaaccttcgtaatattctgaaaaggattggcgataatattcctgttattggtttaacg
gctactgcaactcctaaggtgcaggaagatattctgaagaatttaggtattaccgatgcc
aaaacttttaaagcaagttttaatcgacctaatctttattatgaagtaaggccgaaaaca
aaaaatattgaagcagatattactcgttttgtaaagcagaatgatggaaaatctggaatt
atttattgtttgagccggaaaaaagtggaggaattagcacaaactcttcaggtgaatggg
ataaaagcagttccatatcacgccggtttggatgcgaaaaaaagatcaaaacatcaagat
atgttcttgatggaagatatagatgtggttgtggcaaccatcgcttttgggatggggata
gataaacccgatgttcgtttcgtgattcatcatgatatcccgaaaagtattgaaagttat
tatcaggaaactggtcgtgccggtagagatggaggagaaggacattgcctcgctttttat
tcttacaaggatatagagaaactggagaaattcatgagcggtaaacctgttgctgaacag
gaaattggtcatgccttacttcaggaagtggttgcctatgctgaaacttcggtttccagg
agaaaatttatccttcattattttggagaggaatttagttctgaaactggagatggggcc
gatatggatgataatgttcgttaccctaaaaaacaggttgaagcgaaagaggatcttgaa
cttttattaagaatggttaaagaaaccaatgagctttataaatctaaggaggtagtaaaa
accttgataggtaaatctaatgctctcattctttctcataaaacagatgaacatccctta
tttggtaaagggtctcatcaagagtcaaattactggatggcccttacacgtcaggcactg
gtaagcggttttcttaaaaaagatattgaaacttacggtgttgtaaagatcacagaaaag
gggagaaactatcttcagaatcctgtttcctatatgatgacggaagatcatatatataac
gctgctacagaagaggcagtgactaaagccgataagggaggagcttctgtagatgcccaa
ttggtgaaaatgctgaaggagttaagaaagaaggttgcaaagaaaaaggatttgcctcca
tttgtcatatttcaagatccttctttagaggatatggccttaaaatatcctgttaatatt
gatgagttaagtaatattcatggagtaggagaagggaaagctaagaaatatggaaatgaa
ttcgttgaacttattgcgcgatacgtagaggataatgatattgtaagaccagatgatttt
gtcgtaaaatcaacaggagctaatagttctctgaaactttatattattcagaatgtagac
agaaaattaccattaacagatattgcctctgctaaaggcatgtctatgccagattttgtc
aaggagatggaagcgattgtttatagtggaacaaaactgaatatagattattggctggat
gatattctggatgaagatcagcaggaagaaattcacgattactttctggaagcagaaacc
gataagatcgatgaagcgatggaggaatttgatggggattatgatgatgaggaattgagg
ctctaccgaatcaaatttattagtcaggtcgcaaattag
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