Christiangramia forsetii: GFO_1099
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Entry
GFO_1099 CDS
T00448
Name
(GenBank) DeaD-like DEAD box family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFO_1099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfo03019
]
GFO_1099
03009 Ribosome biogenesis [BR:
gfo03009
]
GFO_1099
Enzymes [BR:
gfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFO_1099
Messenger RNA biogenesis [BR:
gfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFO_1099
Ribosome biogenesis [BR:
gfo03009
]
Prokaryotic type
rRNA helicases
GFO_1099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UBA_3
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAL66073
UniProt:
A0M0C8
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All DBs
Position
complement(1169028..1170821)
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AA seq
597 aa
AA seq
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MNAFQKLGLDADLLKAIEDMGFETPSEVQEKSIPILLEKETDLVSLAQTGTGKTAAFGFP
LIQKIDANSKKTQALILSPTRELCLQITNEIKNYSKYKKSLNVVAVYGGASITDQARSIE
RGAQIIVATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKEKKT
WLFSATMPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYYLVNHRNRYDALKRLADAN
PEIFSVIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKIRTVEKI
IQQKFEEKTIPDGKEICKTQLFHLANDIKKTEINHDIDPYLPTINEALEDFTKEELIKKF
FSVEFTRFFNYYEKAPDLSAESVGGRPPVSEGNTRYFINIGSKDGFDWMSLKDFLKEQLD
LGRDDVFKVDVKASFSFFNTDEQHTDLILKTFSEFNHNGRFVNVEVTKDQKSERGGGRRK
ERGGGGGRRNSKSYDDNKGGKFSGKRRSDRNNDKKGPRKGSRNKNIDNSVKRRRSKA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcattccaaaaacttggacttgacgcagacttgcttaaggccatcgaagacatg
ggatttgaaaccccaagtgaagtacaggaaaaatcaatcccaattttattagaaaaagaa
acagatcttgtttctttagcacaaaccggaacaggtaaaactgctgcttttggtttcccg
ctaattcaaaaaattgatgccaattctaaaaagactcaggcgttaatcctttctcctacc
agagagctttgtttacagatcactaacgagatcaagaattactcaaagtataaaaaatct
ttaaatgtagttgccgtttacggtggcgccagtataacagatcaagctagatctattgaa
agaggagctcaaattattgtagctactccaggtagaatgcaggatatgattagaagaagg
ttagctaacatttcctctatcgggtattgtgtccttgatgaggctgatgagatgctgaac
atgggattctatgaggatattaaaaccattctttctcatactcctaaggaaaagaaaaca
tggttattctctgcaactatgcctaaggaggttgctaagattgccaaaaaattcatgaca
gatcctattgaaataactgtagggtctaagaacaaaggaacctctaacgtttctcacgag
tattacctggtgaatcaccgtaacagatacgatgccttaaaaaggcttgcagatgctaat
ccggagatattctcagtaatattctgtagaacaaaaagagacactcaaaaggttgctgaa
aagcttattgaagatggatacaatgcagcggcacttcacggagatctaagtcagaatcag
cgtgatttggtaatgaagagtttcagaagccgccagatccagatgcttgtggctacagat
gtagctgctcgtggtattgatgtagatgatattactcacgtaatcaattatcaattacct
gatgaaatagaaacctacactcaccgtagtggtagaactggtagagccggtaagcaaggt
gtttctatggtgatcatttcaaaaagtgaagttcgtaagatcagaactgttgaaaagatc
attcagcaaaaatttgaagaaaaaactattccagacggaaaagagatttgtaaaactcag
cttttccatttagcgaatgatatcaagaaaacagagatcaatcacgatattgatccttat
ttaccaacgataaatgaagcgctggaagatttcactaaagaagaattgatcaaaaaattc
ttttctgtagaatttacccgtttctttaattattacgaaaaagctccagatctaagtgca
gaatctgttgggggaagacctcctgtttctgaagggaacacgagatatttcatcaatatt
ggatctaaagatgggtttgactggatgagcctgaaagattttcttaaggaacagttggat
cttggtagagatgatgtatttaaagttgatgtaaaagccagcttctctttctttaatacc
gatgagcagcatacagatcttattctgaagacttttagcgaatttaatcataacggtaga
ttcgttaacgttgaagttactaaagatcaaaaatctgaaagaggtggaggccgaagaaaa
gaacgcggtggcggcggaggaagaagaaactctaaaagctacgacgataataaaggtgga
aaattcagcggaaaaaggagatcagacagaaacaacgataaaaaaggtccaagaaaagga
agccgaaataaaaatattgataattctgtaaaaaggagaagatctaaagcttaa
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