Christiangramia forsetii: GFO_2157
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Entry
GFO_2157 CDS
T00448
Name
(GenBank) RhlE-like DEAD box family ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFO_2157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfo03019
]
GFO_2157
Enzymes [BR:
gfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GFO_2157
Messenger RNA biogenesis [BR:
gfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GFO_2157
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
AAA_19
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
CAL67122
UniProt:
A0M3C7
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All DBs
Position
2300181..2301548
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AA seq
455 aa
AA seq
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MQKIKLHTLSFQDLNLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKT
FAYLLPLLRMLKYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINT
QHQDLMQGLDIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELL
PKNRQSIMFSATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLL
KHLLADTETYQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEG
LSRILIATDVMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLLFTTEAEQ
EYLDAIEELMQTEVPKYDLPEEVEIATELIPEEKPRAIEINNPHNVTEEAGPAFHEKKDK
NKKVNLGGSYRREIAQKYKKPKTRGDKNANRRRKK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaaaataaaacttcacactttgagttttcaggacctaaatttaaatactccctta
cgcaatgctctggaagatctgaattttcagactccaacgccaattcaggaacaggcattc
tcctctatcatgtctggaagagatgtggttggaattgcacaaacgggaacaggaaaaacc
ttcgcctatcttttgccattattaagaatgcttaaatattcggaacagaagaatccacgt
attcttatcatggttcccaccagggaactagtggttcaggtagttgaagagatcgaaaaa
ctggcaaagtatatcaatcttagagttgccggagtctatggtggagtaaatatcaatacg
caacatcaggatttaatgcagggactcgatattgtggtagccactccaagaaggttgtac
gatcttgtgcttagaagagctgttcaattaaagtctatccagaaatttgtgattgatgaa
gtggatgtgatgttggatctcggattcaaatttcaggtaaataatatcatcgaactactt
cctaaaaacaggcagagtatcatgttttcggctaccatgacagaaacggttgaggaaatg
atcgataccaattttaaagctccggaaaagatctctgtagccgtaagcggtactccattg
gaaaacatagaccagcgaggatataaaattccgaatttctatacgaaagcgaatttactg
aaacacctgctcgcagatacggaaacctatcagaaggtgcttatatttattggagataaa
cggattgcagacaggttatatgaaaatcttggtgaagaatttcccggcgacacaagcctt
gtacataccggaaaaagtcagaattacagattaaaaagcgtgggtgattttgatgaagga
ttatcccggattttaattgctacagatgtgatggcccgcggtctggatatagagaatgtt
tctcatgtggtgaattttgataccccacaatatcctgaaaattatatgcataggattggt
agaactggacgtgccgagaaaaaaggtcagtcgttgttatttactacggaagcggaacag
gaatatctggatgctattgaagaattaatgcaaactgaagttcctaaatatgatcttccg
gaagaagtagaaatcgctactgaattgatccccgaagaaaaaccaagggcaattgaaatc
aataatcctcataatgtcactgaagaagccggtcctgcttttcatgagaaaaaagataaa
aataagaaggtaaatcttggcggttcctatagaagagagattgctcaaaaatataaaaaa
ccaaaaacgcggggtgataagaacgccaatcgtagaaggaagaaatag
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