Christiangramia forsetii: GFO_2369
Help
Entry
GFO_2369 CDS
T00448
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GFO_2369 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfo03021
]
GFO_2369 (rpoC)
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_2369 (rpoC)
Enzymes [BR:
gfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GFO_2369 (rpoC)
Transcription machinery [BR:
gfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GFO_2369 (rpoC)
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GFO_2369 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF4825
Motif
Other DBs
NCBI-ProteinID:
CAL67333
UniProt:
A0M3Y8
LinkDB
All DBs
Position
complement(2515268..2519569)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNTVQRFNQISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQAGNAKNEEGEPLKKMDFLTEEEYLNILDELPQENQY
LDDSDPNKFIAKMGAECLIEILKRIDLDELSYELRHKANNETSKQRKTEALKRLQVVEAL
RDANKNRENNPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKMFECGLPKNMAAELYKPFIIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKHKKTTKDE
TVIGEGLTFYSAEELVIAYNQKRVDLNAGIKIRTKDYNEEGELVYMIKDTTVGRVLFNEA
VPEKAGYINEVLTKKSLREIIGKILKITSVPETSEFLDEIKGLGYGFAFRGGLSFSLGDI
IIPEEKQSMIDEANEQVEGIIGNYNMGLITNNERYNQVIDIWTSTNAGLTDLAMKRIRED
KQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEDDCGTLRGVEVKPLKKNE
EIVESLGERILGRISLNDVVNPSTQEHIVATNEEITEEIVAKIEAAPIESVEVRSPLTCE
AKKGICIKCYGRNLATNKIVQTGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LEAKFAGVAEIEDLKVVKGEAPDGGTADIVISRTAELKIKDKKTGVVLSNNNIPYGSQIN
INDGATVKEGEVICTWDPYNGVIISEFAGKIKYENVEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLHILGKKDEVIRSYNLPVGAHLMVDNEEKIGVGKILVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILNIKGPNAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIVDPGDTIFLENQLVHKADFIEENNKLFGMKVIEDAGDSEKLKAGQIITPRDL
RDENSILRREDKNLATARDVITATANPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKIDYLEGLKENVIVGHRIPAGTGMRKYDSIIVGSKEEFDQMLEKKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaataatgataaaaatacagtacagaggttcaaccagatctctataggttta
gcttctccagagtctatccttgcggaatctcgcggcgaagttcttaagcctgaaacgatc
aattaccgtacgcacaaaccagagcgtgacggattgttctgtgagcgtatttttggtcct
gtaaaggattatgagtgtgcctgcggaaaatataagagaattcgttacaaagggattgtt
tgtgaccgttgtggtgtagaagttaccgagaagaaggtgcgtagagaccgtgttggtcat
attaaccttgtagtacctgtagctcatatctggtatttccgttctttacctaacaaaatt
ggttatttgttgggacttccttctaagaaacttgacatgatcatctactacgaaagatat
gtagtgatccaggcaggtaatgcgaagaatgaagaaggagaaccattgaagaaaatggat
ttcttgacggaagaagaatatctaaatattttagatgaacttcctcaggaaaatcaatat
ttagacgacagcgacccaaataagtttatcgctaaaatgggagctgaatgtctaatcgaa
attcttaagagaatagatcttgatgaactttcttatgaattaagacataaagctaataac
gaaacttccaagcaacgtaaaacggaggctcttaagagacttcaggtggtggaagcactt
cgtgatgcaaataaaaatcgtgaaaacaatccagaatggatgatcatgaaggtagtaccg
gttattccaccggaacttagacctttggtgcctcttgatggtggtcgtttcgctacttca
gatttgaacgatctttaccgtcgtgtaattattcgtaacaaccgtctgaaaagattaatg
gagattaaagctcctgaggtgattcttagaaatgagaaacgtatgcttcaggaatctgta
gattcattattcgataatacaagaaaatcatcagcagtaaaaactgattctaaccgtccg
cttaaatcactttcagattcattgaaagggaaacaagggcgtttccgtcagaacctgctt
ggtaagcgtgtggattattcagcacgttcggtaatcgttgtaggaccggaactaaaaatg
ttcgaatgtggtcttcccaagaatatggcagcggaactttacaagccttttattattaga
aaactgatagaaagagggatcgtaaaaacagtgaagtctgctaagaagattatcgataag
aaagaacctgtagtttgggatatattggaaaatgtgttgaaagggcatccggtattattg
aaccgtgctcctacacttcaccgtctgggaatccaggcattccagcctaaacttattgaa
ggtaaggcaattcagcttcacccacttgcgtgtactgcattcaatgccgattttgatggt
gaccagatggcagttcatttaccacttgggccggaagctattctagaagcacagttatta
atgcttgcttctcataatattttgaaccctgcaaacggttctcctattactgtaccttct
caggatatggtacttggtctttattatatgaccaagcacaagaaaactactaaagatgag
acagtaattggtgaaggacttactttttattctgcggaagagcttgtaatagcttacaac
cagaagagagtagatcttaacgcaggaatcaagattagaactaaagattacaacgaagaa
ggtgaattggtttatatgatcaaggataccacggttggtagagttttatttaatgaagct
gtacctgaaaaagccgggtatatcaatgaggtattaactaagaaatcccttcgtgagatt
attggtaagattcttaaaattacaagtgtacctgaaacttcagaattccttgatgagatt
aaaggtcttggatatggatttgcattccgtggtggactttccttcagcttaggtgatatt
atcatccctgaagagaaacaatctatgatcgatgaagctaatgagcaggttgaaggtatc
attggtaactataacatgggtcttattaccaataacgaacgttataaccaggtaattgac
atctggacttctacgaacgcaggtcttacagatctggctatgaagcgaattcgtgaagac
aagcaaggattcaactcagtatatatgatgcttgattctggtgctcgtggttcgaaagaa
cagattcgtcagttaaccggtatgcgtggattgatggctaagccgaagaaatctaactct
ggtggaggtgaaattattgaaaacccgattctttctaactttaaagaaggactttcaatt
cttgaatactttatctcaactcacggtgctcgtaaaggtcttgccgataccgcacttaaa
actgccgatgctggttacttaacccgtcgtctggtagatgtttctcaggatgtgatcgta
aatgaagatgactgtggaacattgagaggagtggaagtgaagccacttaaaaagaatgaa
gaaattgtagaatcattaggagagagaatccttggacgtatttctctaaatgatgtggta
aatccatcaacacaagaacatattgttgctacaaatgaagaaataactgaagagatcgtt
gctaagatcgaagctgcgccaatcgagagtgttgaagtacgttcaccacttacttgtgag
gcgaagaaagggatctgtatcaagtgttacggtagaaaccttgcaaccaacaaaattgtt
caaacaggtgaagctgttggggttgttgctgcacagtctattggagaacctggtacacag
cttacactacgtacgttccacgtgggtggtattgcaggtaacatctctgaagataataaa
cttgaagctaagtttgctggtgttgcagagatcgaagatctaaaagttgttaaaggtgaa
gcccctgatggtggaactgcagacatcgtgatctctcgtaccgctgaacttaagatcaag
gataagaaaacaggagttgtattaagtaacaacaatattccttacggttctcagatcaat
attaacgatggagcaacagtgaaggaaggtgaagtaatctgtacttgggatccatataac
ggtgtaattatttctgaatttgccggtaagatcaagtatgagaatgtagaacagggtgtt
acttatcaggttgagatcgatgagcagacaggattccaggaaaaagtaatttctgaatcc
cgtaacaagaaattgatcccaacgcttcatatcctagggaagaaagacgaagtaattcgt
tcttataaccttccggtaggtgctcaccttatggtggacaacgaagagaaaattggagtt
ggtaagattttggttaagattccacgtaaatcttctaaagcaggggatattacaggaggt
cttccaagggtaaccgagcttttcgaagcacgtaacccatctaacccggctgttgtatct
gagattgacggtgtggtatcttttggtaagattaaaagaggtaaccgtgagatcatcgtt
gagtctaaacttggtgaggttaagaagtatcttgttaaattatctaaccagatccttgtt
caggagaatgactacgtgagagctggaatgccactttctgatggttctatcactccggaa
gatatcttgaatatcaaagggccaaatgctgtacaacagtatcttgtgaacgaagttcag
gaggtatatagactacagggtgtgaagattaacgataagcactttgaggttgtggtaaga
cagatgatgcgtaaggtaagaatcgtagatccgggagatactattttccttgaaaatcaa
cttgtacataaagctgatttcatcgaagagaataacaagttattcggaatgaaagttatc
gaagacgcgggtgattctgaaaaactgaaggcaggacaaattatcactccaagagatctt
agagacgaaaactctattcttagaagagaagataagaatcttgcaactgccagagacgta
atcacggcaacggctaatccggtacttcagggtattaccagagcttcacttcaaactaag
tcctttatctctgctgcttccttccaggaaacaacgaaggtattgaacgaggctgcagta
agcggtaagattgattatcttgaaggattgaaggaaaatgtaattgtaggacacagaatt
cctgcaggtacaggtatgagaaaatacgatagcattattgttggttctaaagaagaattt
gaccagatgcttgagaagaaacaggaagttaattataactaa
DBGET
integrated database retrieval system
