Christiangramia forsetii: GFO_2370
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Entry
GFO_2370 CDS
T00448
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GFO_2370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfo03021
]
GFO_2370 (rpoB)
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_2370 (rpoB)
Enzymes [BR:
gfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GFO_2370 (rpoB)
Transcription machinery [BR:
gfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GFO_2370 (rpoB)
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GFO_2370 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CAL67334
UniProt:
A0M3Y9
LinkDB
All DBs
Position
complement(2519640..2523452)
Genome browser
AA seq
1270 aa
AA seq
DB search
MLAKQTERLSFSSVKNKPAYPDFLDLQIKSFQDFFQLETKSEERGNEGLYNTFLENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYLGRKL
AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELEKDHIEEILETGSKTILLHKEDNQ
TGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLDVEMDKQVLTKLDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNGMGFIETPYRSVTDGKINTSEEPIYLSAEEEEGKKIAQANIPLKDDGTIDTDRVIARM
EGDFPVVDPKEIHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRTDSP
IVGTGLERQVATDSRVLINAEGEGEVEYVDANKIVIKYDRTEEERMVSFDDDSKSYNLIK
FRKTNQGSCINLKPIISVGDRVTKGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVINKKLFA
RAIKDKRKRAQDKEDVAALEKKYDAKFANLKADLVEKLFTIIGGKTAQGVQNDLGEEVMP
KGKKYTLKMLNAVDDYTHLTTGTWTTDDHLNELVADLLHNYKIKENDLQGNLRREKFTVS
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKNGKKYATPIFDGATIEEINDLTDKAGIPRYGHTY
LYDGGTGMRFDQRATVGVIYMLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASATLREILTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDIKLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaaagcaaactgaaagattgagtttctcttctgttaagaacaagcctgcttat
ccggactttctggatctgcagattaagtcttttcaggacttctttcaattagagacaaaa
tcagaagagcggggaaatgaaggtctttacaacaccttcctagaaaacttccccattacg
gacacccgtaatcaatttgtactagaattcttagattattttgtggacccgccgagatat
tccattcaggagtgtatagaacgcggattgacctatagtgtaccacttaaggcgagactt
aagttatactgtaccgaccctgaacacgaagattttgaaaccatcgtacaggacgtttat
ttgggaactatcccttatatgacacctagcggaactttctgcatcaacggtgccgagcga
gtagtagtttctcagctacaccgttctccaggggttttctttggacagtctttccatgca
aatggaactaaattatattctgcccgtgtaattccttttaaaggatcatggatagaattt
gctaccgatattaacagcgtaatgtacgcgtatatcgatcgtaagaaaaaattacctgtt
accacgcttttccgtgctatcggatttgagcgtgataaagatattttggagatctttgac
cttgcggaagaagtgaaggtatctaaaacaggacttaaaaaataccttggacgtaaactt
gcggcaagagtattaaatacatggtacgaagatttcgtagatgaagataccggagaagtt
gtctctatcgaacgtaacgagatcgttcttgaccgtgatacagaacttgaaaaagatcac
atagaagaaattcttgaaaccggaagtaaaacgattcttcttcataaagaagataaccaa
accggtgattatgcgatcattcataatacactacaaaaagatcctaccaactctgaaaaa
gaagcggtagaacatatctatcgtcagcttcgtaatgctgaaccgccagatgaggaaact
gctcgtggaattatcgacaaacttttcttctcagatcagcgttacagccttggagaagtt
ggtagatatagaatgaacaaaaagcttggtcttgatgttgaaatggataagcaggtgctt
accaaattagacattattaccattgttaaatatttaattgaacttatcaactctaaagct
gagattgatgatattgatcacctttctaaccgtcgtgtaagaactgtaggtgagcagtta
tctcagcagttcggtgttggtcttgctcgtatggcaagaacaatccgtgagcgtatgaac
gttcgtgataacgaagtgtttactccaattgacttgatcaacgcgaagacattgtcttct
gtgatcaactctttcttcggaactaaccagttatctcagttcatggaccagacgaaccct
cttgcagaaatcacgcataagcgtagactttccgcattaggaccaggtggtttatcaaga
gaaagagcagggttcgaggtacgtgatgttcactatactcactacggaagactttgtcct
attgaaactcctgaaggtccgaatattggtttgatctcttcactttctgtttatgcaaaa
gtgaacggaatgggattcattgaaactccataccgaagtgtaaccgatggtaagatcaat
acttccgaagagccaatttatttaagcgctgaagaagaagaaggtaagaagatagctcag
gctaacattccattaaaagatgacggaactatagatacagatcgtgtaattgcacgtatg
gagggtgatttcccggtagttgatcctaaggagatacattataccgatgttgcaccaaac
cagatctcctctatttcggcttcattaattccattcctggaacatgatgatgccaaccgt
gcattgatgggatcaaacatgatgcgtcaggcagtaccacttttaagaacagattctcct
attgttggaactggacttgaaagacaggtagctacagattctcgagtattgattaatgct
gaaggagaaggagaagtagaatatgtagatgcaaataagattgtaattaagtacgatcgt
actgaagaggaaagaatggtaagttttgatgatgattcaaaatcttacaaccttattaaa
ttccgtaagacgaaccagggatcttgtatcaacctgaaaccaatcataagtgtaggtgac
agagttactaaaggacaggttctttgccagggttatgctactgaagcaggtgaacttgca
ttaggtagaaatatgaaggtagccttcatgccttggaaaggttacaactttgaggatgcg
attgtaatttcagaaaaagtggtaagagatgatattttcacctctatccatatagatgaa
tactctcttgaagtgagagatacaaaactaggtaacgaagaattgacgaatgatattcca
aacgtttcagaagaggctactaaagaccttgatgaacacggaatgattagagttggtgct
gaagtgaagcctggtgatattcttataggtaagattactcctaagggagaaagtgatcca
actcccgaagaaaaacttctacgtgcgatctttggtgacaaagcaggtgatgtaaaagat
gcttcattaaaggcatctccatcattaagtggtgttgttattaataagaagttgttcgca
agagcaattaaagataagcgtaagagagctcaggataaagaagatgttgcagcactagag
aaaaagtacgatgctaaattcgctaatcttaaggctgatcttgttgagaaactattcact
attataggtggaaaaacagctcagggagtacagaatgaccttggtgaagaagtaatgcca
aaaggtaagaagtacacgcttaagatgttaaatgctgtagacgattatacccacttaact
acgggtacatggactacagatgatcaccttaatgagcttgttgcagatcttttacataat
tataaaatcaaggaaaacgatcttcagggtaacctaagaagagagaaattcaccgtttct
gttggagatgaacttccatcaggaattcttaaactggctaaagtttacatcgctaagaaa
cgtaagctgaaggtaggggataagatggcaggacgtcacggtaacaaaggtattgttgca
agaatcgttcgtcaggaagatatgccattccttgaagatggaactccggttgatatcgtg
ttgaacccacttggggtaccatcacgtatgaacatcggtcagatctacgaaacagttctt
ggatgggctggtcagaaaaacgggaagaaatatgcgactccaatttttgacggtgcaact
atcgaagagatcaatgatcttaccgataaagcaggaattccaagatatggtcatacgtat
ctttatgatggtggaaccggaatgagatttgatcaacgtgctacagttggtgtgatttat
atgctgaaattaggtcatatgatcgatgataagatgcacgccagatctattggaccatac
tcacttattactcagcaaccgcttggtggtaaggcacaatttggtggtcagagatttgga
gagatggaagtttgggcattagaggcttatggagcttctgctaccctacgtgaaatcctg
acggtaaaatctgatgatgtgattggtagagctaagacctatgaggctattgtgaagggt
gagccaatgccagaacctggattgccggaatctttcaatgtacttatgcacgaattgaaa
ggtcttggattggatattaaattagaagaataa
DBGET
integrated database retrieval system
