Christiangramia forsetii: GFO_3159
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Entry
GFO_3159 CDS
T00448
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gfo
Christiangramia forsetii
Pathway
gfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFO_3159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfo03400
]
GFO_3159
Enzymes [BR:
gfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFO_3159
DNA repair and recombination proteins [BR:
gfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFO_3159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Sigma54_activ_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAL68103
UniProt:
A0M658
LinkDB
All DBs
Position
3306495..3309872
Genome browser
AA seq
1125 aa
AA seq
DB search
MSTSLIAQKFAQSPQQQELRNAIASFEKNQSNIHLKGLVGSALSFVVADAFKESDHPFLL
IFNDKEEAAYYLNDLEQLVGEKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PALIVTYPDALFEKVVTRKELDKSTLKIAVGDELSIDFVNEVLFEYQFKRVDFVTEPGEF
SVRGGIIDVFSFSHDEPYRIEFFGDEIDSIRTFDVETQLSTDKKKKISVMPNVENKHLDE
VRESFLKYISAKTIVFIKNLDLLSAQADKLYKKAEEAFKELSEDVKHSEPKELFCDGGLI
KKQLSEYASVELSTQAFLKAEKTIAFNTKPQPSFNKQFDLLIENLVENQEAGYTNFICCV
SDQQAKRFHDIFEDQDKEVKYQTPVFSMFQGFVDEDLKTVCYTDHQIFERYHKFSLKNGY
AKKQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDILYLSI
HSLHKISKFNGKDGKPPKIYKLGSNAWKNLKKKTKARVKHIAYDLIKLYAKRRLEKGFKF
DPDSYLQHELEASFMYEDTPDQSSSTAAVKADMENERPMDRLVCGDVGFGKTEIAIRAAF
KAVDNNKQVAILVPTTILAFQHHRTFTERLKDFPVRIDYLNRFRTAKERKETLADLEAGK
VDIIIGTHQLVSKAVKFKDLGLLVVDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTL
QFSLMAARDLSTITTPPPNRYPIESHVIRFSEETIRDAVSYEIQRGGQVFFIHNRVENIK
EVAGMIQRLVPDAKIGVGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVSEANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRITALEQFSELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFRDLYAETEDVEH
KDFVKDTQIDTDFELLFPDDYINNITERLNLYTKLNELKTEEELQKFEADLVDRFGELPT
QAVDLLNSVRIKWIAAKIGLERVIMKKNKMVGYFIADQKSRFYQTNNFTKVLQYVQTHRQ
NCTMKEKETRGGLKLLLTFDRITSVEKALKVLQPLDFREKKEELV
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaagtcttatcgcccagaaatttgcacagtccccgcaacagcaggaactgcgc
aacgctattgcctccttcgaaaaaaatcaatctaacattcatcttaaaggtctggtaggt
tctgcattgtcttttgtagtggcagatgcttttaaggaatctgaccatcctttcctcttg
atctttaatgataaagaggaagcagcctattatttgaatgacctggaacagctggttggg
gaaaagaatgtgcttttttatcccggaagctatagaagaccttatcaaattgaggaaacc
gataacgcgaatgttctgcttagggctgaagttttaaaccggataaactccagaaaaaaa
ccggccttaattgttacttatcccgatgctttatttgaaaaagttgtaaccagaaaagaa
ctggacaagagtacgctcaaaattgccgttggcgatgaactctctatagactttgtaaat
gaggtgctctttgaatatcagttcaaaagagttgattttgtaactgaaccaggagagttt
tctgttcgaggaggaattatagatgtgttttcctttagtcatgatgaaccctatagaatt
gaatttttcggcgatgaaatagacagtatcagaacttttgatgtggaaacacagctttcc
acagataaaaagaagaagatctctgtaatgcccaatgtggaaaacaaacatttagatgaa
gttagagagagttttctaaaatatatttcagcaaagaccatcgtttttatcaagaacctt
gacctgctttcagctcaagctgacaagctgtataaaaaagcagaggaagcttttaaggaa
ctttcagaagatgtaaagcatagtgagcctaaagaacttttttgtgatggcgggcttatt
aaaaaacaattgagcgagtacgcttcagtagaattaagtactcaggcatttctcaaggca
gagaaaactattgcatttaataccaaaccccaaccttcttttaataagcaatttgattta
cttattgaaaatcttgtggagaatcaagaggcgggatataccaatttcatatgctgtgta
agcgaccagcaggcaaagcgttttcatgatatttttgaagatcaggataaagaagtaaaa
tatcagactccggttttttccatgttccagggatttgtagatgaagatttaaaaacggtt
tgttatacagatcaccagatatttgagcgttatcataaattcagccttaaaaatggatac
gccaaaaaacaggcaataaccctgaaagaacttaccaatcttgaggttggagattatgtt
acccatatagaccacggaattggaaaatttggaggacttcagaaaattgatgtagaaggc
aaaaaacaggaagctataaaactgatctacggagaacgggatatcttatacctaagcatt
cattcacttcataagatttccaagttcaacggaaaggacggcaaacctccaaaaatttat
aaacttggaagcaatgcctggaaaaatctgaagaagaaaacaaaagcgcgtgttaagcat
attgcctatgatcttattaagttatatgcgaaaagaagacttgaaaaaggattcaaattt
gacccggattcctatttacaacacgaactggaggcttcatttatgtatgaagacactcct
gaccaaagttcatctactgcagcagtaaaagctgatatggaaaacgaacgcccaatggat
cgcctggtatgtggggatgttggatttggtaaaactgaaatcgccataagagccgcattt
aaagcagtagataacaataagcaggtagcgatcctagttcctacgactattctggcattt
caacatcatcgaacatttactgaacgtttaaaagattttccggtaaggatagattattta
aaccgctttagaactgcgaaagaacgtaaagaaactttagccgatctggaagctggtaag
gtggatattatcatcgggacacatcaattggttagtaaagcggtaaaatttaaagatctt
ggcttacttgtggttgacgaagaacagaaatttggggtggctgtaaaagataaattaaag
actatcaaagaaaatgtggatacgctaacgcttactgcaacaccaattccgagaacactt
cagtttagtttgatggcggcacgtgatctttcaacgattaccactcccccaccaaaccgg
tatccaattgaaagccatgtgatccgtttttccgaagaaactattcgggatgctgtttct
tatgaaattcaacgtggcggacaggttttctttatccacaatcgagttgaaaacatcaag
gaagtggccgggatgatccagaggctggttcccgatgctaaaattggcgttggacatgga
cagatggagggtaagaaactggaaaaactgatgttaagctttattaacggggagtttgat
gtcctggtttcaacgactatcgtagaaagcggattggatgtttctgaagcaaatactatt
tttattaataacgccaataattttggactttctgatcttcaccagatgcgtggccgtgtt
ggtagaagcaataaaaaggcattttgttattttattactccgccttactcagcgatgacg
gaagatgcacggaaaagaattaccgcgctggaacaattttcagaactgggaagcggattt
aatattgccatgaaagatttggagattcgtggagcaggagatttgcttggtggggaacaa
agcggcttcatcaatgatattggttttgatacgtatcaaaaaattctaaatgaagcgatt
gaagagttaaaagaaaatgaattccgtgatctatatgccgaaactgaagatgtagaacac
aaagactttgtaaaagatacccagatagataccgattttgaattgctctttcctgatgat
tatatcaataatatcacagaaagactcaacctctacaccaaacttaacgaacttaaaact
gaagaagaacttcagaagtttgaagctgatctggtggatagatttggagaactcccaaca
caggccgttgatttgttaaactctgtaagaataaaatggattgctgcaaaaataggtttg
gaaagagtgatcatgaaaaagaacaaaatggtaggttattttatcgccgatcaaaaatcc
aggttctaccaaaccaataactttacgaaagtgctgcaatatgtgcaaacacatagacaa
aactgcaccatgaaagaaaaggaaacccggggaggactaaagcttttactaacttttgac
aggattacatccgtagaaaaggcattgaaggttttgcaacctttagactttagagagaaa
aaagaggaattggtgtaa
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