Geospiza fortis (medium ground-finch): 102031339
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Entry
102031339 CDS
T03755
Symbol
DROSHA
Name
(RefSeq) drosha ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102031339 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102031339 (DROSHA)
03009 Ribosome biogenesis [BR:
gfr03009
]
102031339 (DROSHA)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102031339 (DROSHA)
Enzymes [BR:
gfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
102031339 (DROSHA)
Messenger RNA biogenesis [BR:
gfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
102031339 (DROSHA)
Ribosome biogenesis [BR:
gfr03009
]
Eukaryotic type
90S particles
RNase
102031339 (DROSHA)
Prokaryotic type
rRNA processing factors
102031339 (DROSHA)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
102031339 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
YcaO
Motif
Other DBs
NCBI-GeneID:
102031339
NCBI-ProteinID:
XP_005423911
UniProt:
A0A6I9HK40
LinkDB
All DBs
Position
Un
AA seq
1313 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARSSTQTYRPQNLRQLHPQQPSVQYQYEQQTAPPTTYSNPPAT
AYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPTPPPVPNPTN
TPVPGAPAGQSTFPYMMPPPTVPHPPPPPVMPQQVSYQPVYSAGYSQQSFPPPSHFRHTG
QYQGEKSQSERRSPDRSKHYDEHRHREHGHMHGDRHRSANHGDRRDRGRSPDRRRQESSR
HRTDYDRGRISPHHRSYERNRERERERHRHRDSRRSPSPDRSYKKDYKRAGSRSPSRERK
RTRWEEDRERWSENQSSSKEKNYTAVKDKESEENASEKNEEEDEELLKPVWVRCTHSESY
YSNDPMDQVGDSTVVGTSKLRDLYEKFDEELGKRQAKAKAARPPWEPPKTKLDEDLESSS
ESECDSEDDSSCSSSSDSDVIDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAK
ARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVSPPTNFLTDRPTVIEYDDHEYIF
EGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVRGLELFSSYLFKDILELYD
WNLKGPSLENDSISCPRYHFMPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIAN
MLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDREQFNPDVITFPIIVHFGIRPAQ
LSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLSQREEALQKIRQKNTMRREVTVE
LSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHLDKLIGYTFRDRCLLQLAMTHPS
HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHIHMRKKGINTLINIMSRLGQDDPAPSR
INHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELERF
MLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFNEKDLRDVWLNY
PLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLG
HNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI
TNDKTKRPVTLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDP
KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAE
MGAAMDALEKYNFPQMAHQKRFIERKYRQELKELRWEREHQERESEETEEARK
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgtggccaggggggaccaggagcaagatct
tcaacacagacctaccgccctcagaacctgcggcagcttcacccacagcagccctccgtg
cagtaccagtatgagcagcaaaccgcccctccgacaacctactccaaccctcccgccacc
gcttacatgcctcccaggccagactttgtgccctatcctcctccagtgcccccttccaca
caaaatcccatcagccagtgtcccatgaggccaccatttccaaatcaccagatgcggcag
agcttcccagtgcctccatgtttccctcccactcctccaccagtgccaaaccctaccaac
actcccgtgccaggagcacctgctggacaaagcacctttccttacatgatgcctcccccc
acagtaccacaccctcccccgccaccagtcatgccgcagcaggtcagctaccagcctgtg
tactcggcgggctactcgcagcagtccttccccccccccagccacttccggcacacgggg
cagtaccagggagagaaatcccaaagtgagcggcgctccccggacaggagcaagcactac
gatgagcaccggcaccgtgagcacgggcacatgcacggcgacaggcaccgctccgctaac
catggcgatcgtcgggatcgcggccgcagtccggataggaggaggcaggaaagcagtcgg
caccggacggattatgacaggggaaggatatcgcctcatcacagaagttatgagcgaaat
agggagcgggagagggagaggcatcggcaccgagacagcagaagatcaccatcaccagac
agatcctacaaaaaggattacaagagagcaggcagccggtctccaagcagagagagaaag
agaacccggtgggaggaggacagagaaaggtggtctgagaaccagagctccagtaaagag
aaaaattatactgctgtcaaagacaaagaatcagaagagaatgcatctgaaaaaaatgaa
gaggaagatgaggaattgcttaagccagtctgggttcgctgtacccattctgaaagctat
tattccaatgaccctatggatcaagtgggggattctactgtggtaggaacaagcaagctc
cgggatttgtatgaaaagtttgacgaggagttaggaaagcgacaagcaaaggccaaagca
gccaggccaccatgggagccaccaaaaaccaagctggatgaagatttagagagctccagt
gagtcagagtgtgactccgaagatgacagcagctgctccagcagttcagattcagatgtt
attgacgtcattgcagaaattaagcgtaaaaaagcacaccctgatcgtctccacgaggaa
ttgtggtacaatgatccaggacagatgaatgatggacctctgtgcaaatgcagtgctaaa
gcccggcgaacaggaataagacatggcatttatcctggcgaagagcccattaaaccatgt
cgtcccatgaccaacaatgctggaagactgtaccactaccgaattactgtgtcacctccc
acaaatttcttaacagacagacctactgttattgagtatgatgaccatgagtatatcttt
gaagggttctccatgtttgcacatgccccgcttacaaacattcctctatgcaaagtaatc
aggtttaacattgactatacaattcatttcattgaggagatgatgcctgagaatttttgt
gtgagaggccttgaactgttctcttcatatctattcaaagatattttggaattgtatgac
tggaatcttaaaggtccttcacttgaaaatgattctatttcctgtcccagataccacttc
atgccgcggtttgtgagatttctcccagatggaggaaaagaagtactctcaatgcatcag
attcttctctacttgttacgatgcagtaaagctctggtgcctgaagaggagattgctaac
atgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaagggatgatc
gttaccagccctggcatgaagcccagctcagttcgtattgatcaactagaccgcgaacaa
ttcaatcctgatgtaattactttccctattattgtgcactttgggatacgacctgctcaa
ctcagttatgctggagatcctcaataccaaaagctgtggaagagttacgtgaagctgcgt
cacctgctggctaatagtcccaaagtcaaacaggctgataaacagaaattatcacaaaga
gaggaggcactgcagaaaattcgccagaagaacacaatgagacgtgaagtcactgtggag
ttgagcagccagggcttctggaaaacggggatacgctctgatgtctgccagcatgcaatg
atgcttcctgtcctcacccaccatgtccgctaccatcagtgtctgatgcacttggacaaa
ttgataggctacacttttcgagataggtgcttgctgcagcttgccatgactcacccaagc
catcatttaaattttgggatgaatccggatcatgccagaaattccttatccaactgtggg
attcgacagcccaagtatggagatagaaaagttcaccatatacacatgagaaaaaaaggg
atcaacaccctgataaatattatgtcccgtttgggacaggatgatccagctccttccagg
attaaccacaatgagcgtttagaatttctgggagatgccgtggtggagttcttaacaagt
gtccacttatactacctgtttcccactctggaggaaggaggattagctacgtaccgcact
gccatcgtacagaaccagcacctggccatgctggctaagaagctggaactggaacggttc
atgctctatgctcatggtccagacctttgcagggagtcagatctccgccatgccatggcc
aactgctttgaagccctcataggagctgtttatctagagggaagcctggaagaagcaaaa
caattatttggacgtttgctcttcaatgaaaaggacctgcgggatgtatggcttaattat
ccactacacccactccaactgcaggagtccaatactgacaggcaactcattgagacctct
ccagttcttcagaagcttacggagtttgaggaggcaattggagtcatctttactcacgtt
cgacttctagcacgtgcattcactctgaggacagtaggctttaaccatctgactctaggc
cacaaccagaggatggaattcctgggtgactccataatgcagttggtagccacagagtat
ttattcatacatttccccgatcatcatgaagggcacttaacgctgttgagaagttctttg
gtgaacaacaggacacaggccaaggtagcagaagagctgggcatgcaagagtttgccatc
actaacgacaagacaaaaagacctgtaactcttcgaactaagactttggctgatctcttg
gaatcctttattgctgccctgtacattgataaagatttggaatacgttcacactttcatg
aatgtttgcttttttccacggctaaaggagtttattttaaatcaagattggaatgatcct
aaatctcagcttcagcagtgctgcttgactctcaggacagaaggaaaagaaccggacatt
cctctctacaagaccctgcagacagtggggccttctcatgccaggacatacacagtagct
gtctacttcaaaggggaaagaataggatgtggtaaaggtccaagtattcagcaagcagaa
atgggagctgcaatggacgcacttgaaaaatataactttccccagatggcccatcagaaa
cggttcattgaacggaagtacagacaagagttgaaagaattgaggtgggaaagagagcat
caagagagagagtcagaggagactgaagaagcaaggaaataa
DBGET
integrated database retrieval system
