Geospiza fortis (medium ground-finch): 102031552
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Entry
102031552 CDS
T03755
Symbol
TTC37
Name
(RefSeq) tetratricopeptide repeat domain 37
KO
K12600
superkiller protein 3
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102031552 (TTC37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102031552 (TTC37)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
102031552 (TTC37)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_2
TPR_1
TPR_14
TPR_16
TPR_12
TPR_8
TPR_11
TPR_CcmH_CycH
TPR_17
TPR_7
ANAPC3
TPR_9
ARM_TT21_C
TPR_6
TPR_15
Retrotran_gag_2
BTAD
TPR_5
PPTA
Fis1_TPR_C
TPR_20
TolB_N
HAT_Syf1_M
Imm71
TPR_30
Motif
Other DBs
NCBI-GeneID:
102031552
NCBI-ProteinID:
XP_005423491
LinkDB
All DBs
Position
Un
AA seq
1550 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKQYKEALKHCKAVLKQEKNNYHAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPNQTDVKGDLADVYQKLLELYESGDKQKWFDICN
KLVELYHQEKKYLEVAETWQKLIRMKQEEGAEKAELYQLWKKMIHLLKDSTKNQDNKTGQ
LLLTAFEHALHSADTVPGEDHQNLYKDFIQCLSKFPHEVARLEKACDDMMALYPTMTYPL
EVLCLHFVQSGTLSEKGLHCFSKLLEMDASSGPGIIGFGIKCLKENKYKEAVKSLTEGLQ
KTNQCPAAWYYLAEAQMKIHDHRNAVLSCNQALEALGTPEGPNLRWKNLAFQLKAETLIK
IADADAAEEAIKALEQIVDGSSDPVISALRGQAYLNKGLMDQAAKVSQELLLSHPDLAEA
HALEGFIHYSQKSYDQAEKSFLNAIERKAGTAEYHQYLGLTYWFMGNETRKDKGKALTQF
LKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELG
DMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYFNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNYLDRKAVDYIEQALAYFTRAVKHRPDVSCLWKLLGD
TCTSVHVISPAKVNVQVLGSLLSKNETKQVLTKNELLILGGRCYGRALKLMSLPSIWCDL
GINYYRQAEHLTAVGADMNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAVGN
YALAQHSFIKSVQAEQINVVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLLCWIGQA
LIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKANRNTELYLYNIVQMNAI
PAAQVVLSKYTERNPDDASAFAMFGFLNEYLDLKQQAAYAYERAATLLKNSEDTEKYNIA
MQNYGRSLCALGRCDEAIEVYTSVPLTEFDGIVGLALAYFKKGLFEESIKAYEKALSVAE
SEKDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDVTLATA
ALKELLKHEKGNDGIYERCLIASAVYALQGRNVAIQREVSKAIHSXXXXPALWSLLSRLV
PLYASKKPKGGAVAGSVAQTLDVNCGKEGCHMLEDKKNNPLKNIQKAIHVCPDNPVAWAV
LMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGESNLPHNYVRTLEDWCLCQAITS
LGETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQLLQCHKELPDNILEELRKTVMS
SSSSAAAWQWLAKIYQSQRMMTGAEICYRRSLQLASQQGSWNGTLSSLLRLAMLALEICM
ANVSNEHWPSLVQEATTEALKLSPCPLAALLQALLQYNLKMGARETRRMLERIVYQPANP
ETIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSSSA
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagtgctagagatgcaataagaaataaa
cagtacaaggaggccttaaaacactgcaaggcagtcttgaagcaagaaaaaaataactac
catgcttgggtattcattggcctggcagctgctgagttagagcagcctgatcaggccaaa
ggagcatacaagaaggccatcgaacttgaaccaaaccagttactggcatggcagggatta
gcaaatttgtatgagaaacccaaccaaacagatgtcaaaggagacttagcagacgtttac
caaaaactcttggaactttatgaaagtggtgacaagcagaaatggtttgatatatgtaac
aagcttgtggaactataccatcaagaaaagaaatatttagaggtggctgaaacttggcag
aaactaataaggatgaaacaggaggaaggtgcagaaaaggcagagctttatcagctttgg
aagaagatgatccacttactgaaagacagtacaaagaaccaggataataagactgggcag
ttgcttttgactgcattcgaacatgcactgcactctgctgacactgttcctggtgaagac
caccaaaatctttacaaagacttcatacaatgcttgtcaaaatttcctcatgaagtcgct
agattggaaaaggcttgtgatgatatgatggctttgtaccctactatgacttaccctttg
gaagtactttgcttgcactttgttcagtcaggtactttgtcagaaaaaggcctgcactgt
ttctcgaaacttttggagatggatgcaagcagtggtccaggcatcattggctttggtata
aaatgcctcaaagaaaataaatacaaggaggctgttaaaagtcttactgaaggtttgcag
aagactaaccagtgtccagcagcatggtattatctagcagaggcacagatgaaaatccat
gatcacaggaacgctgtcctgtcctgcaatcaagctcttgaggctcttggaactcctgag
ggtcctaatcttcggtggaagaatcttgcctttcagctgaaagcagagactttgattaaa
atagctgatgctgatgctgcagaagaagccattaaagcacttgagcagattgtagatgga
agcagtgatccagtgatttcagctctcaggggtcaggcttatctaaacaaaggtttaatg
gatcaggctgcaaaggtttcacaagaacttctcttgtcccaccctgatctggctgaggcc
catgctctagagggtttcatccattattcccaaaagagctatgaccaggcagaaaaaagt
tttctaaatgctattgaaagaaaggctggaactgcagagtatcatcagtacctggggctc
acatactggttcatgggcaatgaaacaagaaaagacaaaggaaaagcactcactcagttc
ttgaaggctgcaaaattggacagctacttgggaagtgccttttgttatctaggtaactac
tacagagacattgctggagacaaaagcagagctcgtggttgctataaaaaggcttttgaa
ctggatgagacggatgaagaatctggaacagcagctgtcaatttaagtgtggaacttgga
gacatggacactgctctgtcaatcctgaatgaggtaactgaaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttactacttgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcggctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttacttcaacagaggtagctactcaacagctctgaaatccttcagg
aaagcaagtgagctgaatccaggacttgtgtacagcatttacagagctgcagcacttgag
caaattctaggcaaatacgaaaatgctatagctacttatcaacaaatactaaagaagaca
gaaaactatgtgcctgcactgaaaggacttggtgagtgttatctcatgctggcaagatca
gcccttgataactatttggataggaaggctgtggattacatagagcaggcccttgcatat
tttacaagggcagtaaagcaccgtcctgatgtatcttgcctctggaaactgttaggagat
acctgtactagtgtacatgttatttcaccagccaaagtgaatgttcaagtactaggatcc
cttctgagtaaaaatgaaaccaaacaggtgctgacgaaaaatgagcttctcatactggga
ggaaggtgttatggcagagctttaaaattgatgtctttgccaagcatatggtgtgatctt
ggaataaattattatcgccaagcggagcacctcacagcagtgggcgctgacatgaatgag
atcagtgaactgttagagaagtctttgcagtgtctcaaaaaagctgtgagacttgacagc
aaaaatcatctttattggaatgcgcttggtgtagttgcttcttgtagtgctgttgggaat
tatgctcttgcacaacattcgttcatcaaatctgttcaagctgagcaaattaatgttgtt
gcctggaccaacttgggggttttgtatctggcaactggaaacattgagcaagctcatgaa
gccttcaaggtagcccagtctctggaaccttcttacctcttgtgttggattggacaggct
cttattgcagagactgtaggcagctatgatactatggatctcttcaggcacacaactgaa
ctcagtatgcatactgagggagcaaaaggctatgcccactgggtatgttcaacgctgcag
gataaagccaacagaaacactgaactgtatctgtacaacattgttcaaatgaatgctata
ccagcagcccaagtggtcttgagcaaatatacagaaagaaatccagatgatgcttctgct
ttcgcaatgtttgggtttttgaatgagtatctggatctaaaacagcaggcagcctatgcc
tatgagagggcagctacactgctgaaaaactcagaggatactgagaaatacaatatagca
atgcaaaactatggcaggtcactatgtgctcttgggcgctgtgatgaggccattgaagtt
tacacatcagtacccctaacagagtttgatggcattgtggggctagcgttagcttacttc
aagaaaggactctttgaagaaagtatcaaagcctatgaaaaagccttgtctgttgctgag
tctgaaaaagataaagcacatatcctgactgccttggcaataatagaatataaactgaac
aaagtggatgctgcaaagacactgctgtttaaatgctcattaaaggaacctagtacggaa
agtctgaaggctttgtgcacactgggattggtaaagcaggatgtaacacttgcaacagca
gccctaaaagaattactaaagcatgaaaaagggaatgatgggatttatgagaggtgtctc
attgcatctgctgtttatgcattacaaggtagaaatgtggcaatccagagggaagtctcc
aaagcaatacattcccnnnnnnnnnnncctgccctttggtctcttctgtcacgactagtt
ccactgtatgcatcaaaaaagccaaaaggaggagctgtagcaggaagtgttgcacagacg
cttgatgtaaactgtggaaaggaaggatgtcacatgttagaagataagaaaaacaatcct
ctgaaaaatattcagaaggccatccacgtctgtccagataatcctgttgcttgggcagtg
ctaatggcagcctgtcatgctgaaaacactgttgtctgtctaaacaacactgaaccgaaa
cgaacaggcctagagatgacacttgtgtctacagtttcagccaaaactggagaaagtaat
cttccacataattatgtccgtactcttgaagactggtgtctgtgtcaagctattaccagt
ctaggggagactggtaaactgtcagaagctgaagctctttgtaacaagggtttaaaaagc
tgccctgagcacccagctctatttttgcttctgagacaagttcagtgcaagcagttgttg
cagtgtcacaaagaacttccagacaacatcctggaggaacttcgcaagacagtcatgtcc
agttcatcctcagctgcggcctggcaatggctggcaaaaatatatcagtctcagagaatg
atgactggagcagagatatgttacagaaggagtctgcagttggcatcacagcagggcagc
tggaacgggacgttatccagtctgctcaggctagctatgctcgcactggaaatctgcatg
gctaatgtttcaaatgaacactggccatccttggttcaggaggcaacgactgaagctttg
aaactttctccttgccctttggcagctctccttcaagccctactacaatataatctcaaa
atgggagcaagggaaactcggcgaatgttggagagaattgtttaccaaccagccaatcca
gaaaccatagtgtcagtggcacgctggtacctcctgcaacatctgtatgccaaagatgat
tgtgaattaatagatgtgcttatagaaaatgccaaagctaatggagatgttagagctctg
gaactaaatgagaaattatcatcaagtgcctag
DBGET
integrated database retrieval system
