Geospiza fortis (medium ground-finch): 102031575
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Entry
102031575 CDS
T03755
Symbol
CHD6
Name
(RefSeq) chromodomain helicase DNA binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102031575 (CHD6)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102031575 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HTH_CHD1_Hrp3
DEAD
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
102031575
NCBI-ProteinID:
XP_014165554
LinkDB
All DBs
Position
Un
AA seq
2733 aa
AA seq
DB search
MIMKIQKKEKQPPSLKALSLSPMSSAWECRTQDTFASSEEQDEVPRQVTVTATNTGGQCQ
CLKEEPNGAAQKRTSNQNGMQDSGGTGVKKKRKKKDLGEQEGGDKAAVEVKPKRRREPKE
PKEPKKVKESKKPKEPKQREVAKKPRKPREPKAPKEPKDKKSGSEPAPRSRSKKSSKDTP
VEKKKKGKRKNEIPVNSLDLDQDLLSPSVQSPEESVESADSQKRRSGRQVKRRKYNEDLD
FKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKEAHPGGL
AFETEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFN
PDYVEVDRILEVAHTKDPDTGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFEALQI
PPEIKHMVTYPEERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISR
QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNR
NCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEE
QVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGA
NQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHCPEAPDFQLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC
KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVGWLLERGQVEDLLRKGAYGALM
DEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQK
WAKIAELDTDAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRF
NEKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHY
KGDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNADWLA
TCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAADKAFEGTPARELDVLLP
DIDYVEIPVDWWKAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSAEQG
VSDGAQDAAERGSVEKEESSGEKLEGLSKQEDIVAAGVGEASEKRDEPAAAQDGSDSDRS
CWPVSSALTARLRRLVTVYQRCNRKELPPRAEMLVPGNHGYWLQDEMFRRASEMDSVNKE
MQKRWTRREQADFYRTVSSFGVIYDQEKKIFDWAQFRAISRLEKKTDESLEKYFYSFVAM
CKNVCGLPLWKEDGPPDPDIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLKLC
QPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMNDPQLSFLDAYRNYAQHKRAGLPG
PETLCCLYQSNSKLYSSPMYSQMDQSCEALENEAESHIKLETVDSTMSQAGGSPLDTNCE
TFMSEVRDIISSNYDESSLPDSLVCMMYDEKACPSEQSSLARDSPSCTDVGSSGAKLSEG
KLEGDEDPSSCDADAMREAPFLEGLQVGSDQMDNQNEEAKPSPSTPESNPPQSAPAKLSK
GLEQKGALASPVAGLPDRGTVERVLSVGLYSPSLHNYELKIPPEQRFISLLQEKGLEAKS
GPSQSHSEEDEEEEEDDDNSEAAADAVEGLNGPRTRADFDPEAHELGGEEQSSGLPIPED
TCPEDVNGKRESLGLGEPGAEVREHCGLNEESIQQHSPHRAQSQPFSLPTPLPQGRPQGA
EAPCVREEPLGQDAEGQTGCTETLHPEPQGIKQEECENRDDGEKASSNQSQDGPEKYLEE
ESKNSTSVLPGEIDDLQDARAPTIAQLLQEKTLYSFSEWPKDRVIISRIDNICHAILKGK
WPSSSQQFEAQSLLTAPAMASSTGSRSSFTESEAPDPTFNNGVLMSRVQKEGFLSPAFAK
DERKHRRPYEFEMERDAKQRSLEQLAAAHVHPPIVLNGWREAAVDLSRGSDGSPGNSSPF
PLNTNMPKLGTMNALQSSLGMDLSGILQAGLIHPVTGQIVNGSLRRDDAAMRRRRGRRKN
VEGMDLIFLKERPLPNRLQDIQEEQPQPPQNSPLPDGPVAATSTPQPVPAAGSQEKAVPN
KSLLDWLRQQSDYTLDAPGFGTNFSDKPKQRRQRCKDPNKLDISSLTGEERVPVVHKGTG
RRLGGATAPALKELPRWLDANLEYAVAADWADIVKLSGYLPENKFNRILTEPVLRDTGPR
RRGRRPRNELLKGPGVVADSSSGMGPLFMNGLIAGMDLVGLQNMRNMQGIPLTGLVGFPA
GFAAVPSGEDVKSTLSMLPMMLPGMATVPQMFGVGGLLNSPMTTTCTATAPTSLTSTTKG
GTASAEKANEEKQGSQDGKKEPLAEDKPGPSSFSNQTESAITTSSPVAFNPFLIPGMSPG
LIYPSMFLSPGIGMALPGIQQTRHSEVANLESQKRKRKKAKGELANPEPETVSLPEKEAA
SSQNCVQQSPPAVAEKEQDGPAEEERQAAHDTD
NT seq
8202 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaaaaaagaaaagcagccgccaagcttaaaagcgctgagcctc
tccccaatgtcgtctgcctgggagtgcaggacgcaggacacctttgccagcagtgaagag
caggacgaggtgccacgccaggtgacagtgacagccacgaacacaggtggccagtgccag
tgcctgaaggaggagcccaatggggctgcccagaagcggacaagcaaccagaatgggatg
caggacagcgggggcacgggggtgaagaagaaacggaagaaaaaggatctgggagagcag
gaaggaggagataaagcagctgtggaggtgaaaccaaagaggaggagagagcctaaagaa
ccaaaagagcctaaaaaggtgaaggagtctaagaagccgaaggagcccaagcagagggag
gtggctaagaagccccggaaacctcgggaacccaaagccccgaaggagcctaaagacaag
aagagtggctctgagccagcccccagatcaagatccaagaagagcagcaaagacacccct
gtggagaagaagaagaaagggaagaggaaaaatgagataccagtgaacagtttggatttg
gatcaggatctcctgagcccatctgtacagagcccagaggagtctgtggagtcagctgac
agccagaaacggcgctcaggacgacaggtgaagaggaggaagtacaacgaggacctggat
ttcaaggttgtggatgatgatggcgagacaattgccgtgctgggagctgggcgaacctcg
gcgctctccgcctctactctggcgtggcaggcagaggagcctcccgaggatgatgccaat
atcattgagaagatccttgcttccaggatggtgcagaaggaggctcatcctggaggcctg
gcatttgagacagaggagttctacgtcaagtacaggaacttctcttacctccactgtaaa
tgggcaactctggaggagctggagaaggatcccaggatctcgcagaaaataaagcgcttc
cggaacaagcaggctcagatgaaacatatttttacagagcctgatgaagatttgttcaac
cctgactatgtggaggtagatcgaattctggaggtggctcacacaaaggaccctgacact
ggggaggaggtgactcactacttggtgaagtggtgctcgctgccctatgaggagagcacc
tgggagctggaggaggatgttgacccagggaagattaaagagtttgaagccctccaaatc
cctccagaaatcaagcacatggtaacgtaccctgaggagcgcccagcgtccgagtcctgg
cagaagctggagaagtccagagagtacaagaacagcaaccagctgcgggagtatcagctg
gaggggatgaactggctgctctttaactggtacaacaggaagaactgcatcctggctgat
gagatggggttggggaagacaatccagtcaatcactttcctctcagagatattcctgatg
ggcatccatggccccttcctcatcatcgcacctctctccaccatcacgaactgggagagg
gagttccgcacctggacggagatgaacgccatcgtgtaccacggcagccagatcagccgg
cagatgatccagcagtacgagatggtgtacagggacacacagggtaaccctctccctggg
atcttcaagttccaagtggttatcaccacctttgagatgatccttgctgattgcccggag
ctgaagaagatccagtggcgctgtgtggtcattgacgaggcacatcgcctgaagaacagg
aactgcaaactcctggaggggctgaagctcatggccctggagcacaaggtgctgctaaca
gggacccccctgcagaactcagtagaggagctcttcagcctcctaaattttctggagcca
cagcagttcccctcagagacagccttcctggaagagtttggagacctgaagacagaggag
caggtgaagaagctgcagtccatcctcaagcccatgatgctgcgacggctgaaggatgat
gtagagaagaatctggcacccaagcaggagaccatcattgaggtggagctgaccaatatc
cagaagaaatactaccgggccatcctggagaagaatttctccttcctctccaagggtgcc
aaccagcacaatatgcccaacctcatcaataccatgatggagctgcgcaagtgctgcaat
cacccatacctcatcaatggggcagaggagaagatcctggaagacttccgcaaaacacac
tgcccagaggcaccagacttccagctgcaggcgatgatccaggcagctgggaagctggtg
ctcattgataagctgcttcccaagctgatcgctggagggcacaaggtgctcatcttctca
cagatggtgcgctgccttgacatcctggaggactatctcattcagagacggtacacctat
gagcgcattgacgggcgggtgcgcggcaacctgcgccaggccgccatcgaccgcttctgc
aagcccgactcggatcgctttgtcttcctcctgtgcacgcgggcaggtgggctgggcatc
aacctgaccgctgctgacacctgcatcatcttcgactccgactggaacccacagaatgac
ctgcaggctcaagctcgctgccatcgcatcgggcagagcaaggctgtgaaggtctatcgc
ctcatcaccaggaactcctatgagcgggagatgttcgacaaggccagcctgaagctgggc
ctggataaagctgtgctgcaggacatcaaccgcaagggcagcaccaatggggtaggttgg
ctgctggagcgaggccaggtggaggacctgctgcggaaaggtgcctatggtgcactcatg
gatgaggaggatgaggggtcgaagttctgtgaggaagacattgatcagatcctccagcgc
aggacacagaccatcacgatccagtctgagggaaagggctccacatttgcaaaggccagc
tttgtagcatcaggaaacagaactgacatttccttagatgaccccaacttctggcagaag
tgggccaagatagcagagctcgatacagatgccaagaacgagaaggagagcctggtcatt
gacagaccccgggtgcggaagcaaaccaagcactacaactccttcgaggaggacgagctg
atggagttctctgagctggacagtgactcggatgagcgacccacgcgctcacggcgcttc
aacgagaagacgcggcggtacctgcgggctgagtgcttccgtgtggagaagaacctgctc
atatttggctggggacgctggaaagatatcctgacccatgggcggttcaagtggcacctg
aatgagaaggacatggagatgatttgtcgggccttgctggtgtattgcgtcaaacactac
aagggggacgagaagattaagagttttatctgggatctcatcacgccaacgaaggatggc
cagaatcaggctctgcagaatcactcaggcctgtcagcaccggtgcccagaggcaggaag
gggaagaagacaaagaaccagatgctgcttcctgagataaagaacgcagactggctcgcc
acctgcaaccccgaggtggtgctccacgatgacagctacaagaagcacctcaaacagcac
tgcaacaaggttctgctgcgggtgcgaatgctctactacctgaaggctgaagtgctgggg
gaggctgcggataaagcctttgaggggacccctgccagggagctggatgtactgctgcca
gacattgactacgtggagatcccagtggactggtggaaggccgaagctgataaatccctg
ctcatcggcgtcttcaagcatggttacgagcggtacaacgccatgcgggcggacccagcg
ctgtgtttcctggagaaggtgggcatgcccgatgagaagctgctctctgccgagcagggc
gtcagcgatggggcacaggatgctgccgaaaggggcagtgtggaaaaagaagagagcagt
ggagaaaagctggaggggctgtcaaaacaggaggacatcgtggctgctggggtgggtgaa
gccagtgagaagcgggacgagccagcggcagcccaggatggctccgactcagacagatcc
tgctggcctgtctcctctgctctcacggccagactgcggcgactcgtcaccgtctaccag
cgctgcaaccgcaaggagctgcctccccgtgctgagatgctggtgcccggtaaccatggc
tactggctgcaggatgagatgttccggagagcctctgagatggactcagtgaacaaagaa
atgcagaaaaggtggaccaggagggagcaggcagatttctaccgcactgtctcctccttt
ggggttatctatgaccaagaaaaaaaaatctttgactgggcccagttccgagccatctct
cgactggagaagaagacagatgagagcctggagaagtacttctacagctttgtggccatg
tgcaagaacgtctgtggtctccctctgtggaaagaggatggtcctccagaccctgacatc
tacgtggagcccatcacggaggagcgtgctgccaggaccctgtaccgcatcgagctgctg
cggaaggtgcgcgagcaggtgctcaagtgcccgcagctccacgagcgcctcaagctgtgc
cagcccagcctctacctgcccgtgtggtgggagtgtggcaaacacgaccgggacctgctc
atcggcaccgccaagcacggcctgaaccgcactgactactacatcatgaatgacccccag
ctgtcttttctagacgcatacagaaactatgcccagcataaaagagcagggctcccaggc
ccagaaaccctgtgctgcctttaccagtctaactccaaactctacagttcccccatgtac
agccagatggatcagtcatgtgaagccctggagaatgaagctgagagtcacatcaagcta
gaaaccgtggacagcaccatgtcccaggctgggggcagcccgctggacacaaactgtgaa
acattcatgtccgaagtccgggacatcatttccagtaactacgacgagagctcgctgccg
gactcgctggtgtgcatgatgtacgatgagaaggcctgtcccagcgagcagagctccctc
gccagggacagccccagctgcacagatgtcggaagcagcggcgccaaactctctgagggc
aagctggagggggatgaggatccgtccagctgcgatgcagatgccatgagagaggctccc
ttcctggagggtttgcaggtgggctctgaccaaatggacaatcagaatgaggaagctaag
ccttctccttctacccccgagagcaatcctccacagagtgccccagcgaaactcagcaaa
ggtttggaacagaaaggagcacttgccagcccggtggcagggctgcccgaccgtggcacc
gtggaaagggtcctaagtgtggggctctacagtcccagtctccataactatgaactaaag
attcctcctgagcagaggttcatcagtctgctgcaggagaaaggattggaggcaaagtcg
gggccaagtcagagccacagcgaggaagatgaggaggaagaagaggacgatgataactct
gaggcagcagcagatgccgtggaaggcttgaatggtcccaggaccagggctgattttgac
cctgaggctcatgaactggggggtgaggagcagagctctggtctccccatacctgaggac
acttgcccagaagatgtaaatggcaagagggagtccctgggtctgggggagcccggggca
gaggtcagggagcactgtggcttgaatgaggagagcatccagcagcactcaccgcaccgg
gctcaaagccagcccttcagcctgcccacacctctgcctcaggggaggcctcagggggca
gaggccccctgtgtcagggaggagcccttgggccaagatgctgaggggcagacaggctgc
acagagaccctacaccctgagcctcagggcataaagcaagaagagtgtgagaacagagat
gatggggagaaagccagcagcaaccagagccaagatggtccagagaagtacttggaggaa
gagagcaagaattctacttctgtcctgcctggggagattgatgatcttcaggatgcccgg
gcaccaaccattgcccagctgctgcaagagaagacgctttactccttctctgagtggcct
aaggaccgtgtgatcatcagccgcattgacaacatctgccacgccatcctgaagggcaag
tggccttcctccagccagcagtttgaggcacagagcctgctgacagccccagccatggcc
agcagcaccggcagcaggagcagctttaccgagtcagaagcccctgatcccaccttcaat
aatggggtcttaatgtcacgggtacaaaaggaaggttttctgagccctgcctttgcaaaa
gatgagcggaagcacaggagaccctatgaatttgagatggagagagatgccaaacagagg
agcctggagcagctggcagcagcccatgtgcatccacccattgtgctgaacggctggcgt
gaggcagcggtggacttgtccagaggctctgatgggtccccagggaactcctctcctttc
cccctgaacacaaacatgcccaaactggggaccatgaatgccctccagagctccctgggc
atggacttgtctggcatcctacaggcagggttaatccatcctgtcactggacagattgta
aatggcagcctccgaagagatgatgctgccatgaggaggagacggggcaggaggaaaaat
gttgaagggatggacctcatcttcttgaaggaaaggcctcttccaaacaggctgcaggac
attcaggaagagcagccacagccccctcagaacagtcccctccctgatgggccagttgct
gctacctcaactccacagccagtcccagctgcaggcagccaagagaaggctgtcccgaat
aagagtctccttgactggctccggcagcagtctgactacacactcgatgcccccggcttt
ggcacaaatttttcagacaagcccaagcagaggaggcagcgctgcaaggaccccaacaaa
ctggacattagctctctgacgggagaggagcgggtgccggtggtacataagggtaccgga
cggcggttagggggagccacggcaccagcattgaaggaattgccaaggtggcttgatgca
aacttggagtatgctgttgcagctgactgggctgacattgttaagctttcaggctactta
cccgaaaacaaattcaatcgcatcctcaccgagcctgtgctccgggacactggcccacgc
cggagagggaggaggccccggaatgaactccttaaaggccctggtgttgtagcagattct
tcttctggaatgggaccactgttcatgaacggactaattgcagggatggatctagtggga
cttcagaacatgagaaatatgcaagggatccctctgaccgggctggttgggtttcctgct
ggctttgcagcagtgccctccggtgaggatgtgaagagcaccctgagcatgttgcccatg
atgctcccgggcatggcgaccgtaccccagatgttcggtgtgggaggactcctcaactcc
ccgatgaccacaacttgcaccgccactgctccgacttcgttaacaagcacaacgaaaggc
ggcacggccagcgccgagaaagccaatgaggagaaacagggcagccaggatgggaaaaag
gaacctctcgctgaagataagcctggtcctagttcattttctaatcagacagaatctgca
ataactaccagtagtcctgtagcttttaacccatttcttatcccagggatgtctcctgga
ctgatctatccctccatgttcctttcccctggcattggcatggcgctgcctggcatccag
caaaccaggcactcggaggtggcaaacctggagagccagaagcggaagaggaagaaagcg
aaaggggaattggcaaatccagagccagaaactgtctcactgccggaaaaagaagctgca
agcagtcaaaactgtgtgcagcagagcccgccagcggtggcagagaaggagcaggatgga
ccagcagaggaggagcgccaagcagctcacgatactgattag
DBGET
integrated database retrieval system
