Geospiza fortis (medium ground-finch): 102031603
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Entry
102031603 CDS
T03755
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting 13 homolog A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102031603 (VPS13A)
Membrane trafficking [BR:
gfr04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
102031603 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
102031603
NCBI-ProteinID:
XP_014162415
LinkDB
All DBs
Position
Un
AA seq
3140 aa
AA seq
DB search
MGAVALKNLEIKENALSQLDVPFKVKAGHISQLNLQIPWQNLYTQPVEAVLDGVYLLIVP
TATIKYDAEKEAKQFLEARQRELQRIEEAKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQ
LKISNIHIRYEDDITNRDNPLSFGISLQNLSLQTSDKNWNPCLHDETAKLFHKLVRLDNL
FAYWNVKSEMFYHGGCDESLVNLKQGVASHNMIPDGYDFVFRPISAKAKLLMNPRSDVDF
SSPKIDLDVNLQDITVEFNKPQYFSVMELLESIDMMTRNLPYRKYRPDVPVHNNAKIWWK
YVIDGVLKVNVQPKLQMWSWEHISHHRKQVKNYKELYKTKITSKKTSEEILKLLEEFEKT
LDIFNITLARQQAEVEATKAGLKINRPGVKQDDEKSGGWFSWIWSWSGGKKDEKNQEVKG
SSLEQLMTQEEKAKLYAAIGYSETAVDPTLPKSYEAMKFSVNLLSMSISIRENKQTPKLI
EFALTDLSTVFTQRPGAQAIRFETKITSLEVTGVSQEKCTPRLLSSRTVYSDDSTSLLSI
MFETNPLDEKADQRIRIESQPLEIVYDAMTVNNLVDFFRPPKDVHLEQLTSATLMKLEEF
REKTSTGLLYIIETQKVLDLKINLMASYIIVPQKGFYGHTSNLLLLDLGSFKMTSKSRSD
LSKIKVGQTSIEDIMSRAYDSFDVQLSSMQLLYSKHDENWREARKLKNSSQCILQPLDVN
LEFSRAMVVTDARMPRFKLSGQLPLLSIQISDQKVTSILELIDSIPKPESAPATSSPPKM
TEAALSPVLPAPHSSQGVYPVLDLHSFAESESEEEFYDALSSPVEDMPFFEVSSDPLKQT
VSTRRKNLHKQESLKNMTDFQLKFEVAEVLIKLCRLTGDTEMPVLQLDILGLGTELKVRT
FDMTGSAFLREVGLLCPEYIDDNDTPVYIITTLDNVEDDLLTLEYTKTDIKGPELKTVCQ
NVLQKIKVNFSSLDVHLHTEALLNAMNYLSNLLPKQETKVVEEPVHEKTEEKKDVLKKLT
SKKSKCEDIIDLIICADLSCLRIFIREKNRRIAEIHIEGLDSQVIMKKAATDVTAKLKNI
SIVDSDEKALYKKALYITEKEVFNFRMVSYVNATDGIAYTNMDVVDNRIYLTVGCIQVVF
VNKFVSSVLAFINNFQAAKEAFTEATVRTAEKAATGVKGLAERSSRLALDINIKAPVVII
PQSAMSANVLVADLGLITVKNQFFIAKTKTRCALPPVIDSMTVKLSELKLYRSYYEQDSL
QTEVQLLQPVNLEVAVERNLAAAWYNEVPDIEISGRLKPMNLILSQEDITTILRTLNENA
GESSDASTALPESKASASHSSEMHGTSQHSAGVTVVTSAVVELHSPMKIKTTLKLDFRFD
SLTLVLYSPNSKQVNSLDQRDDLLKLAEFKLVLMSAALKMLSDGSMNASVKLANCTLDDK
RQSIQKATPRMVEMKHGFEKKVMVDVNYKQGRDGTALDVIVQEIYLCASMEFLLTVADIF
LKANAESAAAQRNLKQQSLPVKDQASVQPVSTMEMNIVVKNPEIVFVADLTRSDAPALVV
TTQCEIFIKNSPERYNMTAAVREIQMKACPFLPEERKGSITTVLQPCDFFFEMKQSGTNP
QTADLTIKSLTIEVSPIIINTVITITSALYQTTETTKEEISQIPPDLWNKKDIKNLKMWF
LEETNENEDKNPNTELVPTGESLKLNIESVFITLEAGVGHRTVPMLLAKSSFVGEVKNWS
TLINLHSRLELEVHYFNETFGVWEPLLEPLEVEKTDLFKPWTLEIKMKKAKKALFESDDE
EEENYKVPEYKTVINVSSKDQLNITLSKLGLQMLSNLGTAFAEAASQTSDIFKKERAPFV
IINSLGVPITVSPSDSFSVLNVKFGSKIFHLEDKESLNMDFVRSRNESDQFTAMTTLSSK
RFYIQICPHNHSAVEKIPLTKVGRCIYKVRHEESGVERSIVSQIDTVEGSKIITIRSPIQ
IRNHFSIPLNVFEEGRCLGTASPANEFNIPFSSYRSILSLQPLTNENGVGGEFDMCEGIS
FDEIMKNVDSLLQRKCQSVKSTNHSLIINIVPVKDALTTSLGAEDEWDFPYVVHLWPSVL
LRNLLPYQITYAVEGNGNKYDALQEGCSAQIHNAVLDQTKLDLQLLNYLDQDWRSEYHIK
SNLPDISFTTFQCVTELDKTELDIAVHVTYTTGQMVIEIHSPYWMVNKTGRMLQYKADGI
HRKHPPDYKKPLLFSFQPKNFLQNNKVQLRVTDSELSDPFSLDTVGSHGSVKCKSHKKEY
QVGVTINNSSFNITRIVTFTPFFMISNRSKYTLEVAEEGKEKWIPIVLQQCIPFWPENDA
NKLLVRVENSDLPPKKINFDQQENCLLLHLDNKLGGIAVDVNLTEHSTVITFSNYHDGAA
PFLLINHTKEEIIEYGQSSLSELEDCLQPNKAVLYTWADPTGSRKLKWRCGNRTEEIAAK
EDKMEVLSVDCRKVVYLMSFYEGLQRIVLFTEDENVFKLTYESVKAELAEQEIILSLQDV
GISLVNNYTKQEVSYIGITSSDVVWETKPKKKSRWRPMSVKQIDKLEQEFRDYSELSPSE
NKIIELESNVLVCLTPNGMNMTIQQPNEIPIRRNYLPALKVEYSSSAHQKSFRIQIYRIQ
IQNQIPGAIFPFVFYPIKPPKSITLDSAPKPFTDVSIVMRTAGHSQISHIKYFKVLIQEM
DLRLDLGFLYAVGEFFTQTDVPSDQELQLFEKDVESLQEELMSVSSMDTSQISLYEYFHI
SPIKLHLSFSLSAGGEDSNKTDVQDIVFKLAFFELRYHFCTTQQLQSAVIRHYSKQAIKQ
MYILILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAVG
GLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGI
TGIVTKPIRGAQEEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVI
SLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGV
LFVTKGAFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFRSP
EDAKWILSKLEEVRENQPKL
NT seq
9423 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgtagcactgaaaaatctggaaataaaagaaaatgcgctgagtcagttggat
gtgccatttaaagttaaagcaggacatattagtcaacttaacctacagattccatggcaa
aacctttatactcaacctgttgaggcagtccttgatggagtttatttgcttattgtgccc
acagccaccataaaatatgatgctgaaaaagaagccaagcagttcttggaagcaagacaa
agggaattgcagagaatagaagaggccaagcaaaagattgctgaccaagataaagtaaaa
gaagagaaacaagacacttttgtagaaaagctagttactcaggtcatcaaaaatcttcag
ctgaaaatttccaacatccatattcgctatgaagatgatatcacaaatcgtgataacccc
ttgtcatttgggatttcacttcagaatctaagtttgcagacctcggataagaattggaat
ccatgtttacatgatgaaactgccaagttgttccacaagcttgtgcgactggataacctt
tttgcttattggaatgtgaaatcagagatgttctaccatggtggttgtgatgaatcattg
gttaacttaaaacagggagttgccagccacaacatgattccagatggttatgattttgta
ttccgccccatttcagctaaagccaagctccttatgaatcctcgatctgatgttgacttt
tcatcaccgaaaatagatctagatgtaaacttacaggatataactgttgaattcaataag
ccacagtacttcagtgttatggagctccttgagtctattgatatgatgactcgaaatctg
ccatataggaagtacagacctgatgttccagtgcacaacaatgccaagatatggtggaaa
tatgttattgatggcgtccttaaagtaaatgttcaacctaaactccaaatgtggtcatgg
gaacatatttcacatcataggaagcaagtgaagaactataaagagttgtataaaacaaag
ataacatcaaaaaaaactagtgaagaaatcttaaaattgttggaggaatttgaaaagacc
ttggatatttttaacatcactttagcaaggcaacaagcagaagttgaggcaactaaggct
ggattgaaaatcaacaggccaggagtaaaacaggatgatgaaaagtctggtggctggttt
agctggatatggagctggtcgggtggaaaaaaagatgaaaaaaaccaagaagtaaagggt
tcaagtcttgagcagctgatgacacaggaagagaaggctaaactttatgcagcaattgga
tatagtgaaacagctgtggatccaacccttccaaaatcatatgaagccatgaagttctct
gtgaacttattaagcatgtcgatatcaataagagaaaacaagcaaactcctaagctaata
gaatttgcattaactgacttgagtacagtatttacccaacgaccaggtgcacaagcaata
aggtttgaaacaaaaattacctcacttgaagttacaggcgtgtctcaagaaaagtgtaca
ccccgtctcctgtcttctcgaacagtctattcagatgacagtacctcgcttttaagcata
atgtttgagactaatcctttggatgagaaagcagatcagaggattagaatagaatcacaa
ccactggaaatagtatatgatgcaatgacagtaaataacttagtggatttctttagacct
ccaaaagatgtacatttagagcaattgacatcagcaactctgatgaagcttgaagaattc
cgtgaaaaaacatcaacaggattgttgtatattattgaaacccagaaagttcttgacctc
aaaataaacctcatggcttcatacatcattgttccacaaaaaggattttatggccataca
tcaaatttactgcttctggatcttggtagctttaaaatgacaagcaaaagtcgttctgat
ttatcaaaaattaaagtaggacaaacctctattgaagatataatgtccagagcttatgac
agttttgatgtccagctcagtagcatgcagttactgtacagcaaacatgatgagaactgg
agagaagctcggaagctgaaaaactcatctcagtgtatcttgcagcccttggatgtaaac
ctggagtttagcagggctatggttgttacagatgcaagaatgcccaggttcaaactgtca
ggacagttgcctttactttctatccaaatatcagaccagaaggtgacaagtatcttggag
ctaattgatagcattcctaagccagaaagtgcacctgctaccagttcgcctccaaaaatg
actgaggctgcactgtcccctgtgcttccagcaccacattcatctcaaggcgtgtatcct
gttttggatcttcattcatttgctgagtcagaatcagaagaagaattttatgatgcacta
agcagtcctgtggaagatatgccattttttgaagtctcatctgaccccctcaagcagact
gtcagtacaaggcgaaaaaacctacacaaacaagaatctctgaaaaatatgacagatttc
caactaaagtttgaagtagctgaggtcttaattaaattatgccgtcttactggtgatact
gagatgcctgtgctccagcttgatattttgggcttaggcactgaacttaaagtgagaaca
tttgacatgactgggagtgctttccttcgtgaagttggtcttctgtgtccagagtatatt
gatgataatgacacgccagtttacataattactacattggataatgtagaagatgatctt
ctcactctggaatatacaaagactgatattaagggaccagaactgaaaactgtctgtcag
aatgttctacagaaaataaaggtgaacttttcttctctagatgttcatttgcatactgaa
gctctgctgaatgctatgaactatctgagtaatcttctgcctaaacaagaaactaaagtt
gtggaagaaccagtccatgaaaaaacagaagagaagaaggatgttcttaaaaaattaaca
tcaaaaaaatcgaagtgtgaagatattattgacctcattatctgtgcagatttatcatgt
ttgcgtatttttatcagagagaaaaaccgtagaatagctgaaattcacattgaaggtctg
gatagccaagtgatcatgaagaaagcagcaactgatgtgactgcaaaattgaagaacatc
agtattgtggattctgatgagaaagcattgtataaaaaggctctttacatcacagaaaaa
gaagtcttcaacttcagaatggtatcatatgtgaatgctacagatggcattgcatataca
aatatggatgttgttgacaatcgtatttacctaactgttgggtgtattcaagtagttttt
gtcaacaagtttgtttcatctgttttggcttttataaataactttcaagctgccaaggaa
gcttttactgaggcaactgttcgaacagcagagaaagcagctacaggtgtaaaagggtta
gcagagcgtagttcccgtttagcactggatatcaatatcaaggcacctgttgtgataatt
ccacagtcagcaatgtctgcaaatgtcctggtggctgatcttggtctaatcactgtgaag
aaccaattctttattgctaagacaaaaacacgatgtgctcttccacctgttattgactct
atgacggtgaaattgagtgaactgaagttgtacagatcttactatgagcaagattctttg
caaactgaagtacagttgctgcagccagtcaatttggaagtagctgttgaacgaaattta
gctgctgcatggtataatgaagttcccgatattgaaatatctggccgactcaagcctatg
aatctcattctcagtcaggaagatattaccacaatactgaggacattaaatgaaaatgca
ggtgaaagctctgatgcatcaacagctttgccagaatcaaaagcctcagctagtcattct
agtgaaatgcatggtacttctcagcactctgcaggtgtaactgttgtgacatcagctgta
gtggaattgcattcacctatgaaaataaaaacaactctaaaactggacttcagatttgac
tctctgactttagtgttgtatagtccaaattcaaaacaggttaacagtttggatcagagg
gatgaccttttgaagcttgcagagtttaaattagttctcatgtcagctgctctgaaaatg
ttatcagatggttcaatgaatgcttcagtcaaactggcaaactgtacattagatgataaa
agacagtccatccagaaggctacaccaagaatggtggaaatgaaacatggatttgaaaag
aaagttatggtggatgtaaactacaaacaggggagagatggcactgctcttgatgttatt
gttcaagagatatacctttgtgcaagcatggagtttctacttactgtagcagatatattt
ctaaaggctaatgcagaaagtgctgctgcacaaagaaatctcaaacagcagtcattacct
gtaaaggaccaagcatctgtgcagcctgtttcgacaatggaaatgaacattgttgttaaa
aatccagagattgtgtttgtggctgatttaacaagaagcgacgctcctgcattggtagtt
acaacacagtgtgagatcttcattaaaaatagccctgaaaggtacaacatgacagctgct
gttagagaaatacagatgaaagcatgcccatttcttccagaagaaaggaaagggagcatt
actacggtattgcaaccttgtgacttcttctttgaaatgaaacagtcaggtactaatcca
cagacagctgatctaaccattaaatctctaacaatagaagtttcaccaataatcataaac
acagtaattactattacatcagccctttaccaaactacagaaacaacgaaagaagagatt
agtcaaattcctcctgacttgtggaataagaaagatataaaaaatctgaaaatgtggttt
cttgaagagactaatgaaaatgaagataaaaatcctaacactgaactggttcccacaggg
gagtcattgaaacttaatatagaatctgtttttataacacttgaagctggggttgggcac
agaacagtgccaatgcttttagccaagtcctcatttgttggagaagtcaagaactggagt
actctaatcaacctacattctcgtcttgagctagaggtacattattttaatgagacattt
ggcgtgtgggaacctttacttgaaccactagaagttgagaagactgacttattcaagcca
tggactcttgaaatcaagatgaagaaggctaaaaaagcactgtttgaatcagatgatgaa
gaagaagagaactacaaagttccagaatataaaacagtaataaatgtttcctcaaaagac
cagctcaacattacactgtccaagttaggactgcaaatgttgagtaacttgggcacggca
tttgctgaagcagccagtcaaacttcagacatcttcaaaaaagaacgagcaccatttgta
ataataaattctttaggagttcccatcacggtctcgcctagtgattcctttagtgtcctt
aatgttaaatttggatcaaaaatatttcatttagaagacaaagagagtttaaatatggat
tttgtcagaagtagaaatgagagtgaccagttcacagcaatgacaacactaagtagcaag
agattttacattcagatatgtccgcataatcattctgctgtggaaaagattccattgact
aaagtgggtcgatgcatttacaaagtgagacacgaggaatcaggtgttgaaaggtccatc
gtcagtcaaattgacactgttgaaggaagcaagataataactatacgttcccctattcag
ataaggaatcacttttcaatccctttaaatgtttttgaagaaggaagatgtttagggact
gcttcaccagcaaatgaattcaacatacccttttcctcttacagatccatactgagtttg
caaccactaaccaatgaaaatggagtgggtggagaatttgatatgtgtgaaggaatttct
tttgatgaaattatgaaaaatgttgacagtttattacaaaggaaatgccaatctgtgaag
tcaactaaccactcacttatcatcaatattgttcctgtaaaagatgcattgaccacttca
ttaggtgcagaagatgaatgggattttccatatgttgttcatttatggccttctgttctt
ctccgcaatcttcttccttaccaaataacttatgctgtagagggaaatgggaacaaatat
gacgctctacaagaaggatgttctgcccagattcataacgcagtcttggaccaaacaaaa
ctagatttgcaattgcttaactatcttgatcaagactggagaagcgagtaccatataaaa
agcaatctgcctgatatcagcttcacaacatttcagtgtgtcacagagctggataagact
gagctggatattgctgttcatgtgacctacacaactgggcagatggtaatagaaattcac
agtccctactggatggtgaataaaaccggtcgaatgttacaatacaaagcggatggtatt
caccgcaagcatcctccagattacaaaaagcccctccttttttctttccagcctaaaaac
ttccttcaaaataacaaggtgcagcttcgggtaactgacagtgaactgtctgatccgttt
tcactggacactgttggaagtcatggttctgtgaaatgcaagagtcataaaaaggaatat
caagttggtgtcaccataaacaatagcagtttcaatattaccagaattgtaaccttcact
ccattttttatgatttcaaatagaagtaaatacactttggaagtagctgaagagggcaag
gaaaagtggattcccattgttttgcaacagtgcattcctttttggcctgaaaatgatgcc
aacaaactgcttgttagagttgaaaattctgatctccctccaaagaagataaattttgat
cagcaagaaaactgtcttttactgcatttggacaataagcttggaggaattgcagtggat
gttaatctgactgaacattctacagtgattaccttttctaattaccatgatggtgcagct
ccatttctgttgataaaccataccaaagaggaaattattgagtatggacaaagctccctc
agtgaattggaagactgccttcagccaaataaggctgtgttgtatacctgggcagaccca
acaggatctaggaaattaaaatggaggtgtggaaatagaactgaggaaattgctgcaaaa
gaggacaagatggaagtactcagtgtggattgtagaaaagtggtctatttaatgtcgttt
tatgaaggtttacagcgtattgtcctgttcactgaagatgagaatgtatttaaattgaca
tatgaaagtgtaaaagcagaactagcagaacaagaaattattctgtctttgcaagatgtt
ggaatttcattggttaataattatacaaaacaagaggtgtcctacattggaattacaagt
tctgatgtggtgtgggagacaaaacccaagaagaagtcaagatggagaccaatgagtgtt
aagcaaattgataaattagaacaagaattcagagattacagtgagctaagcccttcagaa
aataagattattgagttggaatcaaatgttttggtatgtttaactcctaatggaatgaac
atgacaattcagcagccaaatgagattcctatcagaagaaattatctgccagctttaaaa
gtggaatacagttcctctgcacatcagaagtctttcagaattcaaatttacaggatacaa
atacaaaaccagattcctggagccatatttccctttgtgttctatcctattaaacctcca
aagtccatcaccttggattcagcaccaaaaccatttactgatgtcagtattgtcatgaga
actgcaggacactcacaaatatcacatattaagtattttaaggttctgattcaagagatg
gatctcagattagatcttggcttcctgtatgcagttggtgaattctttacacaaactgat
gtgccaagtgaccaagagctacaacttttcgaaaaggatgttgaatctcttcaagaagaa
ctaatgagtgtgtcatcaatggatacgtcacaaatcagcttgtatgaatacttccatatc
tctccaattaagttacacttgagcttttcactcagtgcgggtggagaagatagtaacaaa
acagatgtacaagatattgtctttaagttggcattctttgagctcaggtatcacttctgt
actacacagcagcttcaatcagcagttataaggcattattcaaaacaggctattaaacag
atgtatattcttattcttggccttgatgtgctgggtaatccatttggattcataagaggc
ttgtctgaaggagtagaagcttttttctatgaaccatatcagggagccatccagggtcct
gaggaatttatagagggaatggcactaggacttaaagcactagtagggggagctgttggt
ggattagcaggagctgcctcaagaatcacaggtgctatggcaaaaggagtagctgcaata
actatggatgaagattaccagcaaaaaaggagagaagccatgaataaacaacccactggt
ctgagagagggtatcactcgtggtggaaaaggactggtttctggttttgtcagtggcata
acaggaatagttacaaaaccaataagaggagctcaagaagaaggagcagccggttttttc
aaaggtgttggaaaaggcttagttggagcagtagctaggcccactggtggaatcatagat
atggcaagcagcacatttcagggtattaaaaaggttgcagattcatcagaagatgtgata
agcctgcgaccacctcgcttctttggtgaagatggagttattagaccttacagattaaga
gatggaactggaagtcaaatgttacagaaaatcgaaaatggaaggtttgcaaaactcaga
tatattgcacatgctatggtcaacagtacagatctgttaatggtaacgaaaagtggtgtg
ttatttgtgacaaaaggggcgtttggacagctgacatgtgaatggcaatacacttatgat
gaatttaccaaagaaccattcatcgttgatggtcgaagattgcgcattgaagccaaggaa
cgagttaagtctgtcttccatgccaaagaatttggaaaaattattaattttagaagtcca
gaggatgctaagtggatcctttccaaactagaagaggtacgagagaatcagccaaaattg
taa
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integrated database retrieval system
