Geospiza fortis (medium ground-finch): 102031747
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Entry
102031747 CDS
T03755
Symbol
PCDH1
Name
(RefSeq) protocadherin 1
KO
K16498
protocadherin delta 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102031747 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gfr01009
]
102031747 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gfr04515
]
102031747 (PCDH1)
Protein phosphatases and associated proteins [BR:
gfr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102031747 (PCDH1)
Cell adhesion molecules [BR:
gfr04515
]
Cadherins
Protocadherins
102031747 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
102031747
NCBI-ProteinID:
XP_005429276
LinkDB
All DBs
Position
Un
AA seq
1174 aa
AA seq
DB search
MNPLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNTLIGSLASDYGLPDMGHLYKLEVG
APYLRVDGKTGDIYTTETSIDRESLRECQHLLPGEPCFLEFEVSITNLNANSSPRLLEGQ
IEVLDINDNTPNFASPVLTLSIPENTNVGTLLMAGPEAQELFGLQVAEDQDEKQPQLIVM
GNLDREQWDSYDLTIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPV
GHSVLQVKANDSDQGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDIGTLKF
SVMAKDKGANPKSARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVA
LVQVSDRDEGENAVVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIE
IVAVDSGNPPLSSTNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDELVMEVSATDADS
GSNAKLVYSLVTDPSSKGAFTIDPDSGEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGT
ASVAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDN
GDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFI
TSPSNATYKHILPHTSPGQQVSKVKAEDIDSGINAELIYSITGGNPFELFQISPQSGDIT
LEKEILRKHHGLHRLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLD
IDIAGDPEYERSKQRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKD
LYAPKQASKSGKSKNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPL
NYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQ
YSDYSYRTNPQKYTNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSG
PRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMP
GQSSPSRRPKNALKLSTFVPYQDRGSQEQVGNGSPXXXXXMANLRLLPTYSAFSNSSHEP
CKDSPMEEIPLTQTSDFQPATTPSAQTTKREIYL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgctggcatcctgcctgggcctgtggctcctctgccagctccctgccctggcc
tcggggacacgtgcggtctacaaagtgcaggaggaacagccccccaacaccctcataggg
agcctggcctctgactacggcttaccggacatggggcacctctacaagctggaagtgggg
gccccgtacctccgtgtggatggcaagactggggacatctacaccacagagacctccatc
gaccgggagagcctgcgggagtgccagcacctcctgcccggagagccctgcttcctggag
ttcgaggtgtccatcaccaacctgaatgccaacagcagcccgcgcctgctcgaggggcag
atcgaggtgctcgatatcaatgacaacacccccaacttcgcctcgcccgtcctcaccctc
tccatccctgagaacaccaacgttgggacgctcctgatggctggtccggaggcgcaggag
ctctttgggctgcaggtggccgaggaccaggatgagaagcagcctcagctgatcgtcatg
gggaacctggaccgggagcagtgggactcctacgatctgaccatcaaggtgcaggatggg
gggaacccccctcgggcgagcagtgccctgctccgcatcaccatcctggacatgaacgac
aacgcacccaagtttgagaaggccctgtatgaggcagagctctctgaaaacagccctgtg
gggcactccgtcctccaggtgaaagccaacgattcggaccagggcgccaacgccgagatc
gactactccttccaccaggcctcggacatggtgcggcggctgctgcgcctggaccgcgcc
acggggctcatcaccgtgcagggccccatcgaccgcgaggacatcggcaccctcaagttc
tccgtcatggccaaggacaagggcgccaaccccaagagcgcccgcacgcaggtggtggtc
accatcaaagacatgaatgataacgcaccctccatagagatccggggcatagggttggtc
acccaccaggatggcatggccaacatctcggaggacgtgccagtagagacagcagtggct
ctggtgcaggtgtccgaccgagatgagggtgaaaacgctgtggtgacctgcgtggtggcc
ggtgatgtcccattccagctgcgccaggccagtgagacagggagtgacagcaagaagaaa
tatttcctgcagaccaccacgccgctggactacgagtcggtgaaggagtacacgattgag
attgtggctgtggactcagggaacccacccctctccagcaccaactccttgaaggtgcag
gtgatggatgtcaatgacaatgcccctgtcttcagccagagcttcactgaggtggccttc
cctgagaacaacgagcccgacgagctggtcatggaggtgagtgccactgatgctgacagc
ggctccaacgccaagctggtttattccctggtgacagacccctcctccaagggcgccttc
accattgaccctgactctggtgagatccgggtgaaggcggtgctggaccgagagcagcgg
gaacgctacgagttcttggtggtggcagaagataagggcagccccagcaagcagggcaca
gcatctgtggccatcaacgtcatggacaggaatgacaacgaccccaagttcatgctgagt
ggctacaacttctcagtgatggagaacatgccgcccctcagccccgtgggcatggtgaca
gtcatcgatgctgacaaaggagaaaatgcccggatccagctgtcggtggagcaagacaac
ggggattttgtcatccaaaatggcactggcaccatcctctccagcatctctttcgaccgg
gagcagcagagcacttacaccttccgactcaaggcggtggacggtggggatccccccagg
tctgcctacgtgggggtgaccatcaacgtcttggatgagaatgacaatgcccccttcatc
acttccccctccaatgccacctacaagcacatcctgccccacaccagccctggccagcag
gtgagcaaggtcaaggcggaggacatcgactcaggcatcaacgccgagctgatctacagc
atcacaggaggaaaccccttcgagctcttccagatctccccgcagagcggtgacatcact
ctggagaaggagatcctgcgcaagcaccacggcctgcaccgcctggtcgtgcgcgtcaac
gacaagggcaagccctcgcggcatggcacggctctggtgcacttctacgtcaacgagacg
ctggccaaccgcacgctactggacacgctggtggggcacagcctggacaccccgctggac
atcgacatcgccggcgaccccgagtacgagcgcagcaagcagcggagcaacatcctcttc
ggggtcatcgccggcatcgtggctgtcaccctggtcatcgtgctggtggtcctggtgcgc
tactgccggcagcgcgaggccaagagcggctaccaggcgggcaagaaggagaccaaggac
ctgtatgcacccaagcaggccagcaagagcgggaagagcaagaacaaggtgaagaagagc
aagtctcccaagccacccaagcccacggaggatgaggaggagacggggctgcagaaatcg
ctcaagttcaacctcatgaacgactctgtcagtgacagcccccggatccaccttcccctg
aactaccctccgggcagcccggacctgggccggcactaccgctccaactcgccactgccc
tccatccagctgcagcctcagtcaccctccgcctccaagaagcaccaagtggtgcaggac
ctgccggccaccaacacctttgttggcaccggggacaacaactcgacgggctccgagcag
tactcggactacagctaccgcaccaacccccagaaatacaccaacaagcagttacctcat
cgccgagtgacgttctctgcagccagccaggctcaggacctgcaggacccctcccagcac
agctactatgacagcgggctggaggaatctgagacccccagcagcaaatcttcatcaggg
ccccgcatcgggcccctggccctgcccgaggaccactacgagcgcaccacgcccgatggc
agcatcggggagatggagcaccccgagaacgatctccggcctctgcccgatgtagccatg
actgggacctgcacccgggagtgcacagagttcggccactctgacacctgctggatgcct
ggccagtcctcccccagccgcaggcccaagaacgccctcaaactctccacttttgtgcct
taccaagacagagggagtcaagagcaagtcgggaacggcagccccnagannnnnnnnnna
atggccaacctccgcctgctccccacgtacagtgccttctccaatagtagccatgagccc
tgcaaggactctcccatggaggaaattcctctcacccagacctcggacttccagccagcc
accaccccctcggcccagaccaccaagagggagatctacctgtga
DBGET
integrated database retrieval system
