Geospiza fortis (medium ground-finch): 102031778
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Entry
102031778 CDS
T03755
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gfr03016
]
102031778 (RTCB)
Enzymes [BR:
gfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102031778 (RTCB)
Transfer RNA biogenesis [BR:
gfr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102031778 (RTCB)
Prokaryotic type
tRNA splicing ligases
102031778 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102031778
NCBI-ProteinID:
XP_014162817
LinkDB
All DBs
Position
Un
AA seq
427 aa
AA seq
DB search
MGAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGV
GFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGV
DWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDE
IYNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACA
RIASAEGQDYLKAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGST
RAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAK
SRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHEAGISKKAIKLR
PIAVIKG
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgggtggcttcctgcctgctatgaaacagattgggaatgtggctgcattgcct
ggcattgttcatagatcaataggccttccagatgtccattctggctatggatttgctatt
ggcaacatggctgcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtc
ggctttgacatcaactgtggtgtccgcttgctgcggacaaatttggatgaaagtgatgtg
cagcctgtgaaagaacagcttgcccaggctatgtttgaccacattcctgttggtgttggc
tccaaaggcgtcatccctatgaatgccaaggatttggaagaggcactggagatgggtgtg
gactggtctctccgagagggctatgcctgggcagaggacaaggagcactgtgaggaatat
ggaagaatgctacaggccgaccccaacaaagtctcttcaagggctaagaaaaggggcctg
cctcagctggggaccctgggagccggaaatcattacgccgagatccaggtggtggatgag
atttacaacgaatatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtg
atgatccacagtggaagcagagggctgggccaccaggttgccacagatgcactggtggct
atggaaaaagctatgaaacgggacaaaatcatagtgaacgatcgccagctggcgtgtgcc
aggattgcctctgcagagggacaggattacctgaaggcctttgccaaagtgttcaacaca
accccggatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaagtg
gagcagcatgtagtggatggaaaggagcggactctgctggtgcacagaaaggggtcaacc
agggcattcccccctcaccatcctcttattgctgtcgattatcaactgactggacagcct
gttttgattggtggcacaatgggcacctgcagctatgtcctcactggcacagagcaaggc
atgactgagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaa
tctcgacgtaacttggacttccaggacgtactggacaagctggctgacatgggtattgcc
atccgtgttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtg
actgatgtggttaacacctgccatgaagctggcatcagcaagaaagccattaaactgaga
cctattgctgttataaaaggctag
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