Geospiza fortis (medium ground-finch): 102031997
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Entry
102031997 CDS
T03755
Symbol
SCAF8
Name
(RefSeq) SR-related CTD associated factor 8
KO
K13191
RNA-binding protein 16
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102031997 (SCAF8)
03041 Spliceosome [BR:
gfr03041
]
102031997 (SCAF8)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102031997 (SCAF8)
Spliceosome [BR:
gfr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102031997 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102031997
NCBI-ProteinID:
XP_005420175
UniProt:
A0A6I9HH21
LinkDB
All DBs
Position
Un
AA seq
1323 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQXAVTPVLPSTTAAMSN
NTPGTPVTPVTPANVAQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQ
KPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQ
NEEPKKETPSSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQQPQKASPEENQ
EGNFGSEHSASPSQGSSQQQFLEVEANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKS
AVHSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRARE
REKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGC
AYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWE
KVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENTQTTQSATVDKSTVITTQTEAYT
QPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPP
PVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTL
SAGSVFNPLPINKPESDDKGPHLTDLQISSSENNRSVQSDVSSTSGLVGGVQPPSVSSSS
GLTGEGPPSTVSSSSGLAAGVQPPSVSSSSGLVGGVQPPTVSSNSGLAGGMQLPAVSSSS
SLAGGIQPTNASSSSGLMAGVPPPNVSSSSGLLAGVHPPGVSSSPGLLTGMQPPSVSSSS
GVLAGVQPPSVSSNSGLLIMPPPNVSTSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHL
NISNQRMPGMXXXXXXXXXXXXXXGPRFPLMQPEMPPQRAIPPPAILDPSLHPPPPRGPF
PPGDIFNQTERPFGTPGRHSIDNISNPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRP
SPVDVRDSVGRPPVDPREGIGRPPVDGREHFARPHIDMRENFGRPGIDNLGRREHFGFNS
DKHWGQRGDYDEREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRD
FDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKA
DNMPQVNGENTETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIESEPVVESTET
EGT
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgtacag
agtgttgagaagttcattcaaaagtgcaaaccagagtacaaggtgcctggtctgtatgtc
attgactccattgtgagacagtcccggcatcaatttggacaagaaaaggatgtatttgca
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgccctggtgat
gacaagagtaaaattgttagagtgctaaatttatggcagaagaataatgtgttcaagagt
gaaattattcagnncgctgtgacccctgtcttgcccagcactacagctgctatgagcaac
aatacgccaggtacacctgtgactccagttaccccagccaatgtggcacagagtttgcct
gatccttgggtatctcagattgctaacacagacacccttgctgctgttgcacagatttta
cagagtcctcaaggccaacagcttcagcagttgatacagacactgcagatacagcagcag
aaacctcagccttcgctacttcaagctctggacgctggtctcgttgtccagttacaggcc
ctcacagcacaactcactgctgcagctgctgctgctaacacacttaatccactggaacag
agtgtctcttttaataagaagctgatggacaggtttgactttggggaagaatctgaacaa
aatgaagagcctaaaaaggaaactccctcttcccaattgccattagtaccagagtctgtg
aacaactcactttttcaccagctagctgaacagctacagcagcaaaatttagaacatctc
agacaacagcttctggagcagcagcagcagcctcaaaaggcaagtcctgaggagaatcaa
gaaggaaactttggttcagagcactctgcgtcaccatcacaagggagtagtcaacagcag
tttttagaagtggaagcaaatgtagatgattccatggatattcaacaacaggacatggat
atagatgaaggtcaggatattgctgaagaagagatttttgaacaagaagaaaagaaatca
gctgttcattcaagatcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacga
aggtctagatcacggtctggttctcgtaagcggaaacacagaaaacgttcacggtcgaga
tcaagagaaaggaagagaaagtcatctcggtcatactccagtgaaagaagggctcgggaa
agggaaaaggaacgtcagaaaaagggattgcctcctatacggtcaaaaacactaagcgtt
tgcagtactactctttgggtaggtcaagtagacaagaaggctacacagcaagatttaaca
aacttgtttgaagaatttggacaaatagagtcaattaatatgattcccccaagaggatgt
gcttatgtctgtatggtacatagacaagatgcatatcgtgctcttcagaaacttagttct
gggtcatataaaattggatctaaaattattaagattgcttgggctttgaataaaggtgtg
aaaacagaatacaagcaattctgggatgtggatctgggagtttcctatattccatgggag
aaagtgaaattggatgatttggaaggctttgctgaaggtggcatgattgatcaggaaaca
gtaaatacagaatgggaaacagccagaagctcagaagctgctaaagaaaatactcaaaca
acgcagagtgctacagtggataagagtaccgttattacaacacagacagaagcttacaca
caaccagtcactatgctgcagattccagtagctccagctgtgcctgctgttagcttggtt
ccacctgcgtttcctgtcacaatgtctgtccctcctcctggttatagcccaattcctcct
ccacccttcttgagagcaagtttcaacccttcacagccacctccaggttatatgcctcct
ccagttccacctgttgtcccaccacctgttgtcccaccacctgttgtcccaccagttgtt
ccaacacctttagtacagcctccattaccaattgcacaagagacgatgaaggatgttcct
tttactggccttgttctaccagttggcacagttactagcaatctagctactccaacattg
tctgctggaagtgtctttaatcccctgccaatcaacaaaccagaatcagatgacaaagga
ccacatcttacagaccttcagatttcttccagtgaaaacaatagatctgtgcaaagtgat
gtctcgagtacctctggacttgttggaggagtgcagccacccagtgtctcaagcagttct
gggcttactggagaagggccaccatccactgtctcaagtagctctgggcttgcagcggga
gtacagccacccagtgtttcaagcagctctggacttgtaggaggagtgcaaccaccaact
gtttccagcaattctggtcttgcaggaggaatgcagctacctgctgtctccagtagctct
tctcttgctggcgggattcagccaactaacgcctcaagtagctctggacttatggctgga
gtgccaccaccaaatgtctcaagtagctcagggcttctagctggagttcatccacctggt
gtctcaagcagccctggccttctgacaggaatgcagccacccagtgtgtccagcagctca
ggagttctggcaggagtacagccaccgagtgtttcaagcaactctgggcttctcataatg
ccaccacccaatgtttcaactagttctggacttatgggagtgccaccaccaaatatttca
agtaattctggacttctggcaatgcagcatccagctgcagttccaaacatgcctcattta
aatatcagtaatcaaagaatgccaggaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnggaccaagatttcctttaatgcagccagaaatgccaccacagcgtgct
attcctcctcctgcaatcctcgatccatctcttcacccaccaccacctcgaggtcctttt
cctccaggagatatttttaatcaaacagaaagaccttttggaacaccgggaagacatagt
atcgataacatttctaatccagagaaaaggctaccacttggaggtgataacattcaacag
gagggggacagagattatcgctttcctccggtggaaaaccgagataatcttaacagacca
tctccagtggatgtcagagattctgttggacgaccaccagttgatccaagagaaggtata
ggaaggcctccggtagatggaagagaacactttgctagaccacatatagacatgagagaa
aattttggaagaccaggtatagataaccttggccgaagagagcattttggtttcaattca
gacaagcactggggacagagaggagattatgatgaaagagagcaccatgccttccctatt
tatggtggccctaaaggcttccatgaagacagagagaggtttcggcatgtaaactatagg
tttgatagtagaagtggtcccagttggaatagaggatttgaacaagatgctcacagagat
tttgatgaccgcagaagaccctgggaaagacagagggatagggatgacagagattttaat
ttttgcagagaaattaatggaaacaggtttggaagagacagaatgtcaaacaactggatc
ccgcctccacatccacgggtttttgaatattttgatggggccacttctcaacgcaaagct
gataatatgccccaggtaaatggtgaaaatacagagacagaaagtcagccaccaactgca
caggtgcaggatgatccagaactttatgaaaaactgacatcttctgtcgagataaacaaa
gagaagagtgacacagaagctgatatagagagtgaaccagtggtagaaagcacagaaact
gaggggacataa
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