Geospiza fortis (medium ground-finch): 102032033
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Entry
102032033 CDS
T03755
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gfr04147
]
102032033 (COL18A1)
00535 Proteoglycans [BR:
gfr00535
]
102032033 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
gfr00536
]
102032033 (COL18A1)
Exosome [BR:
gfr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102032033 (COL18A1)
Proteoglycans [BR:
gfr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102032033 (COL18A1)
Glycosaminoglycan binding proteins [BR:
gfr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102032033 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102032033
NCBI-ProteinID:
XP_014166587
LinkDB
All DBs
Position
Un
AA seq
1668 aa
AA seq
DB search
MAKLLASGTTEDLQFLGSGNTEDPQLLWSGTTEDLQLLETGTTEHLLLLRMRTTEDPQFL
GSVTPKDPQLLGSGTTENPQLPRMGTTEDPQSGATEDLQLLGLGTTEDPQLLGVVSTTNL
QLLVAGHTKDPQPLGTGTTEDPQPLGTGTTEDAELPGTRTTENLQLLVMRNTELLRTVTT
ENPELLGNTENPQLLRTVTPEDPQFLGTGTPTMETQVSLQRPAGLQPGSAPFPFSPGDST
REQAVPFQDPLAQPPHYFPAASRNPWHGTGHPGLALASRSGSQSPPWPDQRVDKGVDSPA
ADNSVPLEFDLLSATMQLYRSDGAGLTSFFPGLMPVASRCQPIPTHLPFCSVLGTRHVRV
PNYLQHGSEEEIRAALHEWEGLLESRCHRYLEWFLCLLLLPGCSPSVPITPPPCQGFCEA
VRDLCWTPLAGRRLPLPCDALPEEDEGVSCVFINASAESLSAEISLLELIGDPPTEEIHR
IYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSI
IYVGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVVLYL
DCEEYERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEE
EEDDTEVSGDFGSGMDGGQRPSGKVEGVPGLLDAVPVTSPPVAGGSGPRGGGGGGPPRQA
ERTRAEETLRVSTGGAGRKGEKGEKGERGLKGDSGTSGIVGPGSVKGQKGEKGDLGVKGS
AGFGYPGSKGQKGEPGDPGLPGTLSRHAAGSVVEQVTGPPGTPGKDGAPGRDGEPGDPGE
DGKPGEMGPPGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSKNDKLTFIDME
GSGFAGDLESLRGPRGPPGPPGPPGVPGLPGEPGQFGMNRTELPGPPGLPGRDGSPGPPG
PVGPQGPPGRDGEAGQPGPKGEQGDMGDLGLPGLPGPKGNKGETGPAGPPGEMGLAGLPG
PVGPRGQPGPPGPPGPPGPGWEAGFGDMEGSGLSFTPGPPGPEGPQGVPGLPGLKGEVGS
PGQPGLPGPKGDAGMPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPP
GPPGQVISVSGEDQSLVAFPGPEGRPGRAGFPGPVGPKGDQGSPGPQGAPGLKGEKGEPG
VIISPDGTVVTAKVKGEKGEPGLQGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEK
GDPADVLGLRGPPGPPGPPGPPGPPGSIVYSNGNTFSDSSHPAFPGFHQFSGQKGEKGDT
GPPGPPGQFPYDVSHFGTSLRGDKGDAGPKGQKGEPGSTPLYSPGVSGLPGPPGPQGYPG
LPGPKGDSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGP
PGPPGPPGTGGISLGLQAMPTYQAMLSAAHELPEGGLVFLTDRQGLYVRLRGGFRRVLLN
PPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLRD
EVLFNNWEALFTGSGAPLRTGARILSFDGRDVLRDAGWXXKSVWHGADAKGRRLPESYCE
TWRTEERAVTGQASSLASGKLLEQAASSCQQAFIVLCIENSFMTATKK
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggccaagctcctggcatcagggaccactgaggacctgcagttcttgggatcagggaat
actgaggacccccagctcttgtggtcaggaaccaccgaggacctgcagctgctggagaca
gggaccactgagcacctgctactcctgagaatgaggaccactgaagacccccagttcctg
gggtcagtgaccccgaaggatccacagctcttggggtcagggaccactgagaacccacag
ctcccgaggatgggaaccaccgaggacccccagtcaggggctactgaggacctgcagctg
ctggggttgggcaccactgaggacccacagctcctgggggtggtgagtaccacaaacctg
cagctcctggtggcagggcacaccaaggacccacagcccttggggacagggaccactgag
gacccacagcccttggggacagggaccaccgaggacgcagagctcccaggcacgaggacc
actgagaatctgcagctcctggtgatgaggaacactgagctcctgaggacagtgaccact
gagaacccagagcttctggggaacactgagaacccacagctcctgaggacagtgacccct
gaagacccacagttcctggggacgggaactcctacaatggagacacaggtgtccttgcag
agaccagcgggtctccagccaggtagtgccccttttcctttctcaccaggtgacagcacc
cgtgagcaggcggtgcctttccaggaccccttggcacaacctccccattacttccccgca
gcatcacggaacccatggcatggcactggccacccagggctggctctggccagcaggagc
gggagccagagccccccttggcctgaccagagggtggataagggtgtggattctcctgct
gccgataactctgtccctctggagttcgatttactaagcgctaccatgcagctctacagg
agtgacggcgcggggctcacatccttctttccaggactgatgccagtggccagccggtgc
cagcccatcccgacccacctgcccttctgcagcgtgctgggcaccaggcacgtccgagtg
ccaaattaccttcagcatggcagcgaggaggaaattcgggcggctttgcatgagtgggag
gggctgcttgagtcgcggtgccatcgctacctggagtggttcctctgcttgctgctgctc
cccggctgtagcccctcggtccccataacccccccgccgtgccagggcttctgcgaggcc
gtcagagacctgtgttggactcccttggccggcaggcgcctgcctctgccttgcgatgct
ctccctgaggaggatgaaggggtttcttgtgtctttattaatgcttctgcagagagcctg
agtgctgagatcagcctgctggagctgattggggacccgccgacggaggagatccacaga
atttatggccccgacaacaaccctggctacgtctttggtcccaacgccaacacgggccag
gtggcccggtaccacctgccgagccctttctaccgagacttctcgctgctgttccacatc
cagcccaccacgccccgggccggcgtgctcttcgccgtcacggactcctcacagagcatc
atctacgtgggcgtcaagctctcggagctgcgcgcgggccagcagcagatcatcttctac
tacacggagccgggctcgcccagctcctacccggccgccaccttcaccgtgcccaccctg
ctcaaccagtggacgcgctttgccatcagcgtggaggaggaggaagttgtcctctacctg
gactgtgaggagtacgagcgtgtccgcttcgagcgctccccggatgagatggagttggaa
gagggctctgggctctttgttgctcaggctggaggggctgacccagataaataccagggg
gtgattgcagatttgaagctccgaggggaccctcgggcggccgagcgccagtgcgaggaa
gaggaggatgacacagaggtctctggggattttggcagtgggatggacggtggacagcgg
ccctcaggcaaggtcgagggtgtcccagggctactggacgctgtccccgtgacctccccg
cccgtggcgggggggagcggccccagggggggggggggcggggggcccccgcgacaagcc
gagaggaccagagcagaggagacgctgcgggtctccacgggaggcgccggtcggaaaggc
gaaaagggggagaagggggaacgtggcttgaaaggggactcggggaccagtggcattgta
gggccaggcagtgtcaagggccaaaagggcgagaaaggagacctgggtgtcaagggcagt
gctgggtttggctaccctggctctaaaggccagaaaggagaaccaggtgaccctggactc
cccgggaccctctctcggcatgccgctggctcggtggtggagcaggtcactggccctcca
gggacaccgggcaaggacggagcccctggcagggatggcgagcctggagatcctggcgag
gacggcaaacccggtgaaatggggcccccggggttccctgggatgccgggggagccgggc
ctgaagggggagaagggtgacccaggcgtggggccgaggggaccccctggaccacctggc
cctccaggaccaccgggaccctcctccaagaatgacaagctgaccttcatcgacatggag
ggctctggcttcgctggtgacctggagagcctgcggggtccacgagggccacctggtccc
ccagggccacctggcgtgcctggtttgccaggggagccaggacagtttgggatgaaccgc
acggagctgccgggaccgcctgggctgccgggcagggacgggagccccgggccgccgggg
ccagtgggtcctcagggtcctccaggaagagatggggaggctgggcagccggggcccaaa
ggagagcagggcgatatgggtgacctcggcctccctggcctacccggacccaagggcaac
aaaggagaaacgggaccagcagggcccccaggagaaatgggcttagccggccttcccggg
cccgtcggaccccgagggcagccagggccccccggccccccgggaccaccggggccgggc
tgggaggctggatttggtgacatggagggctcggggctgtcattcacccctggaccgcct
gggcctgaaggaccacagggtgtgccaggactgccagggctgaagggagaggtcggcagc
cccggacagcctggcttgccgggaccgaagggagatgctggcatgcctggtgtggatggc
cgccctggcctggagggcttccctggaccacagggacccaaaggtgacaaaggcagtact
ggtgagaagggagagcgaggccaagatggagtggggctgcctggcccccctggcccacct
ggtccccctggacaggtgatcagtgtctccggtgaagatcagtctttggtggcttttcct
ggtccagagggcagaccaggccgcgctggcttcccgggcccggtgggaccgaaaggagac
caggggtcacctggtccccagggtgccccagggttgaagggggagaagggggagcccggc
gtcatcatcagccctgacgggaccgtggtcactgccaaggtgaaaggagaaaagggggag
ccagggctgcagggcccaatgggaccatcgggtcccccaggacgagcagggatgaaggga
gagattggctttccgggcagacccggacgtcctggcatgaacgggctgaagggcgagaag
ggtgaccccgcagacgtgctgggcttgcggggtcccccaggccccccaggaccccctggg
ccccctgggccacctggcagcatagtctacagcaatggcaataccttcagtgactccagc
cacccggcgttccctggtttccaccagttctcaggacaaaagggagagaaaggtgacacc
gggcccccaggaccgccaggccagttcccctatgacgtgagtcactttggtaccagcctg
cggggtgacaagggggatgcaggtcccaagggtcagaagggcgagccaggcagcacccca
ctctacagtcctggagtctctggacttccagggcctccagggccccagggataccccggg
ctgccgggtcccaagggggacagtattgttgggccaccggggcctccaggacctcagggt
ccccctggtatcggatacgaggggcggcagggcccccctggccctcctggtccacccggg
ccaccctccttcccaggtccccacagacaagctgtcagcatccctggacccccgggaccc
ccaggaccccctggaccaccaggcactggcgggatatccttggggctccaggccatgccc
acgtaccaggcgatgctgagtgccgcgcacgagctgcccgagggcggcctcgtcttcctg
acggaccggcaggggctctacgtccgcctccgcgggggcttccgcagggtgctgctgaac
cccccgctgagcggcggcatgcgtggcatccggggcgccgatttccagtgcttccagcaa
gcgcgacaggttgggctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggat
ctctacagcatcgtgcgcagggccgaccgcgccgccgtccccatcgtcaacctccgggat
gaagtgctcttcaataactgggaagccctcttcacgggcagcggggccccactgagaacc
ggcgcccgcatcctctcctttgatggccgggatgtcctgcgggatgcgggatggnnnnnn
aagagcgtctggcatggcgcagatgccaagggtcggcgcctgcccgagagctactgcgag
acatggcggacagaggagcgcgcagtcaccggccaggcttcctccttggcctctggaaaa
ctgctggagcaggcggccagcagctgccagcaagccttcattgtcctctgcatcgagaac
agcttcatgaccgccaccaaaaagtga
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integrated database retrieval system
