Geospiza fortis (medium ground-finch): 102032879
Help
Entry
102032879 CDS
T03755
Symbol
USP42
Name
(RefSeq) ubiquitin specific peptidase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gfr01002
]
102032879 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102032879 (USP42)
Enzymes [BR:
gfr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
102032879 (USP42)
Peptidases and inhibitors [BR:
gfr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
102032879 (USP42)
Ubiquitin system [BR:
gfr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
102032879 (USP42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
102032879
NCBI-ProteinID:
XP_005420431
UniProt:
A0A6I9HHJ0
LinkDB
All DBs
Position
Un
AA seq
1334 aa
AA seq
DB search
MTIVNKPKSSKSKKSSSRRSDKSMKPRTKKMTSRTASLGRVPPAEDPNKVSVDKGPGGHI
YCRSSQKSKPFAQRDLVVNDGIAPPQRILFPPEKICMDWQQTQSVGVGLQNLGNTCFLNS
TLQCLTYTPPLANYMLSLEHTKSCHVEGFCMMCTMESHINQVLCCSNNAIKPTSVINGLK
RIGKHFHFGSQEDAHEFLCFTVDALQKACLNGSTKLDRSSQATTLIYQIFGGYLRSRVKC
LNCKAVSDTYEPFLDVTLDIKAVTSVTRALEQFVKPEQLDGENSYKCSKCKKMVPASKRY
TIHRSSNVLTISLKRFANFTGGKINKDVKYPEYLDLRAYMSQSIGEPLIYALYAVLVHSG
FNCNAGHYLCFIKAGNGLWYRMNDASVELSDIKTVLNQQAYVLFYIRRYDLTLGERAFYL
PAPSYPRSFLGQRGASSKQPAFMGPRLPPHMIKSSSRLNGNGPLKEDPSTVGVAVKRPSS
APPTACVQNWAISRPSMADPSKAQKITISIHNKLPPRPAVPQAECPSSAVEEEDLKPLPS
ATITNSSAAEPTSNLSTVSVATNVSKQEVADEIFVEPAVNGNPKLCSDNMVPYGAEPSGK
SEESKGLFKRHCNVISSNGILIGKVVRTLHNSHSSCQNAEERSQHELPKIDSLNGAISLD
NEYKENGLKLDDSTCQVQPVKPSEIFFSKANGVLEAMPKALSPDPQGILESLTYSQLNSL
SEEKSVSGPQKSSDNDGVTNTVVMEALFAYEESRKVPSNFSCEVEKLFTQSDCETIFTKE
EVAESIITKADNAHLNINGQHKVRKKSLDTEGEFLGQSESEDIRDKDKLRRSKEPELISK
ENPLYIKGSPESKEKLGQISSIKPDIECSSKKLASLDITDKCQDTKDISNNYVEVPPVND
SSITKLDKVLESQFSRADEGLSNKICEDDDKHMKKNKKKIHDSKRTDKEHYRRKRESSDT
EEKERQTRNKPDDHSHRRRSSHSMETNKQSRHKQEYCSESKYRSSHNERNSPSNGRSSGK
YSRYRSRSRERTDTDRNRYYYSKGDRPWIRERYYQDEPRRWDKCRYYNDYYSSHGTRDGR
ERRSSHCDKDYDKLSQAYSRSHKDYHCKSRWAHSTLSREEDVHHFSSHRANFHHCSVPQQ
HSEKYSRERHGLPAGSAHSSFEDSSRENEKEKLRNGKRKYSHHEESGSDVEKKCRKTDDQ
RIKKYKKVKKKKKSKDKHREKDYKLYDLDCSVLHFDNDNRKHKKKKKKKKHDRKLKDLLE
YLDPRFQKKTWEKKEESRPPDDHLCEQYRNQGSKQPYKEEKPSGAGDSKKYSSMASTEYV
RDVELTDESLQYSD
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttaacaagccaaaatcttcaaagtctaaaaaatcttcctcaagacgctct
gacaaatctatgaaaccccgtactaaaaaaatgacgtctcgcactgcaagtttgggccgg
gtacctcctgcagaagatccaaacaaagtctctgtggacaaaggtcctggggggcatatt
tattgtagatcatctcaaaaatcaaagccttttgcccaaagagatctagttgttaatgat
gggattgctccgccacaaagaattctttttccgcctgagaaaatctgtatggattggcag
caaacacaaagtgttggagttggactgcagaacctcggcaacacttgtttccttaattct
actctccagtgtttgacctacacgcctcctcttgccaattacatgctttcacttgagcac
accaagtcatgtcatgtagaaggattctgtatgatgtgcacaatggaaagtcacatcaac
caggtcctgtgttgctctaataatgctatcaaacccacgtctgttatcaatggccttaaa
agaataggaaaacatttccattttggcagtcaagaggatgcacatgaattcttatgcttc
actgttgatgctttacagaaagcttgcttgaatggaagtaccaaattagacagatcttct
caagccaccacgcttatttatcagatatttggaggatatctaagatctcgagtaaagtgc
ttgaactgcaaagcagtgtcagacacgtacgagccgtttctcgacgttactttggatata
aaggcagttacgtctgtcaccagagctctggaacaatttgtgaaaccggaacagctggat
ggtgaaaacagctataagtgtagcaagtgtaaaaagatggttccagcatcaaagagatac
acgatacatcgctcttccaatgttctcacaatatcactgaaaagatttgcaaattttaca
ggtggaaagatcaacaaggatgtaaaataccctgaatatttggatcttcgagcatatatg
tcccaatctattggagaacccctcatctatgctttgtatgcagttcttgtacatagtggc
ttcaactgtaatgctggacactatctctgcttcataaaggctggtaatggactttggtac
cgaatgaatgatgcctcagtagagctttctgatatcaaaacagttctcaatcagcaagct
tatgtacttttttatatcaggcgctacgacctgacgctgggggagcgagcgttctacctg
cccgcgccctcctacccgcgctccttcctgggccagcgcggggccagcagcaagcagcct
gcgttcatgggaccccggctgcctccccacatgatcaagagttcaagtcgtttaaatgga
aatggacccttgaaagaggatcccagtactgttggtgttgctgtaaaaaggccgtcttca
gctccaccaacagcttgtgttcagaactgggccatttccaggccttcaatggcagaccct
tccaaagcccagaagatcaccatcagtattcacaacaagctgcccccccggccggcggtg
ccgcaggccgagtgtcccagcagcgctgtggaggaggaggatctgaagccccttccttca
gccacaattacaaactcttctgcagcagagcctacctcaaacctctccacagtgtcagtt
gctactaatgtctccaagcaggaggttgctgatgaaatctttgttgagccagcagtgaat
ggaaaccctaagctgtgttctgataacatggtcccttacggtgcagagccttcaggaaaa
tccgaggagtcaaagggcttgttcaaaaggcattgcaacgtcatctcttccaatgggatt
ctgattgggaaggtggtccgtacattgcataattcccattcatcctgtcagaatgctgaa
gaaagatcccagcatgagctgccaaaaattgattccctaaatggtgctattagtttagat
aatgaatataaagaaaatggactgaaacttgatgattccacttgccaagtccaacccgtt
aaaccttctgagattttcttctctaaagcaaacggagtgcttgaagcgatgcctaaagct
ttgtcaccagatcctcaaggtatcttagaatctcttacgtacagccagttgaacagcttg
tcagaggaaaagagtgtctctggacctcagaagtcttctgacaatgatggagttacaaat
actgtagtgatggaagcactgtttgcctatgaagaatccaggaaggttccttccaacttt
agctgtgaggttgagaaactttttactcaatcagattgcgaaaccatttttaccaaagaa
gaagttgctgaaagtattataacaaaagctgataatgcacatctcaatatcaatggtcag
cacaaggttaggaaaaaatccttggatactgaaggtgaattccttgggcagtctgagtct
gaagacatcagagataaagacaaactaagaagatcaaaagaacctgaactcatttcaaaa
gaaaatcctttgtacatcaaaggatctcctgagagcaaagagaaattagggcaaatttcc
tctataaagcctgacattgaatgtagttctaaaaaacttgcatctctagatattacagat
aaatgccaagatacaaaggacatttctaataactatgtagaggtaccacctgttaatgac
tcttctattacaaagctggataaagtattggaaagtcaattttctagagcagatgaggga
ctgagtaataaaatatgtgaagatgatgataaacatatgaaaaaaaataagaaaaaaatc
catgactctaaaagaactgacaaagagcactaccggaggaagagagaaagctcggacact
gaggagaaggagaggcaaaccagaaacaaaccagatgatcattcccacaggaggaggagc
tctcacagcatggaaacaaacaagcaaagccgtcacaagcaggaatattgcagtgagagc
aagtacagatcctcccacaatgaaaggaacagtcccagtaatggcaggagctcaggaaaa
tattctcgctacagatcccgaagcagagaaaggacagacacagacaggaataggtattat
tattccaaaggagacagaccttggattagagaaagatactatcaagatgaaccacggaga
tgggacaaatgcaggtactacaatgattattattcctcccatggaacacgggatggtagg
gagaggaggtcctctcattgtgataaagactatgacaaattgagccaagcttacagcagg
tcacacaaggattatcactgcaaaagcagatgggctcacagcacactctcccgagaggag
gatgtgcatcacttcagcagccacagagcaaacttccaccattgttcagtacctcagcag
cactcggaaaaatactcccgtgagaggcacgggcttccagcaggctcagctcactccagt
tttgaggactcttcccgggaaaacgaaaaagaaaaactaagaaatggcaaaagaaaatac
tcccaccatgaagaaagtggaagtgacgtagaaaagaaatgccgaaagacagatgaccaa
agaatcaaaaagtataagaaggtcaagaagaaaaagaagtccaaagataaacatcgagag
aaggattacaaactttatgatttggattgctctgtgctccactttgacaatgacaatcgc
aaacataagaaaaagaagaaaaagaagaagcacgacaggaaactgaaagacttattggaa
tatttagatcctcgtttccagaagaaaacatgggagaagaaggaagaatcccgtcctcca
gatgaccatttatgtgagcaatacagaaaccagggcagtaaacaaccctacaaggaagag
aagccttctggtgcaggtgacagcaagaaatacagctccatggcatccactgagtatgtc
agagatgtggagctgactgatgaaagccttcaatactcagactga
DBGET
integrated database retrieval system
