Geospiza fortis (medium ground-finch): 102033078
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Entry
102033078 CDS
T03755
Symbol
LSM1
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102033078 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102033078 (LSM1)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102033078 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
102033078 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
102033078
NCBI-ProteinID:
XP_005430126
LinkDB
All DBs
Position
Un
AA seq
107 aa
AA seq
DB search
MAARNPAAINPVANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP
LQQVSIEEILEEQRVEQQAKQESEKLKVQALKERGLSVPRADTLDEY
NT seq
324 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccgaaacccagccgccatcaaccccgtggcgaacttggtgttgcaccagact
gtggagcgcatccacgtgggcaagaagtatggggacatccctcggggcatcttcgtggtg
aggggcgagaatgtggtgctgctgggggaaattgacctggagaaggagagcgacacgcct
ctgcagcaggtgtccatcgaggagatcctggaggagcagcgggtggagcagcaggccaag
caggagtcagagaagctgaaggtgcaggctctgaaggagcgaggcctctcggtgccacgt
gctgacacgttggatgagtactga
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