KEGG   Geospiza fortis (medium ground-finch): 102033319
Entry
102033319         CDS       T03755                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03030  DNA replication
gfr03410  Base excision repair
gfr03420  Nucleotide excision repair
gfr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102033319 (RFC4)
   03410 Base excision repair
    102033319 (RFC4)
   03420 Nucleotide excision repair
    102033319 (RFC4)
   03430 Mismatch repair
    102033319 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gfr03032]
    102033319 (RFC4)
   03036 Chromosome and associated proteins [BR:gfr03036]
    102033319 (RFC4)
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102033319 (RFC4)
DNA replication proteins [BR:gfr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102033319 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    102033319 (RFC4)
Chromosome and associated proteins [BR:gfr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102033319 (RFC4)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102033319 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    102033319 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_22 AAA_30 AAA_11 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 RuvB_N AAA_5 AAA_19 TIP49_C AAA_28 DNAX_ATPase_lid PSD1 ResIII AAA_7
Other DBs
NCBI-GeneID: 102033319
NCBI-ProteinID: XP_005419060
UniProt: A0A6I9HEK9
LinkDB
Position
Un
AA seq 362 aa
MQAFLKGPASSSTKPVAAKEKNAAGSSGEGKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLVNQLHDTIVESEVYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NI
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaagggcccggcctccagcagcaccaagcctgttgctgccaaggaa
aagaacgcggccgggagcagcggggagggcaagaggaccaaacccatcccctgggtggag
aaatatcgtcccaaaaatgtggatgaggtcgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctagagaactgtttgggcctgatttattccgg
cagagagtccttgagctgaatgcttctgatgagcgtgggatacaagtgatccgggaaaaa
gtgaaggcttttgctcagctaacggcctctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtgatcctggatgaagcagactctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtcttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaagcctttg
tctgacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcatacctagttaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcaaagtgccactcgcttaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtaatccctaaagaaacaattgatgaactgctcttgggctgccag
agtggttcctttgagaaactggagacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttgtaaaccagctgcatgacaccattgtggagagtgaagtttacagcgac
aaacagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagacggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacatctga

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