Geospiza fortis (medium ground-finch): 102033410
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Entry
102033410 CDS
T03755
Symbol
SUPT5H
Name
(RefSeq) SPT5 homolog, DSIF elongation factor subunit
KO
K15172
transcription elongation factor SPT5
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102033410 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102033410 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102033410 (SUPT5H)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
102033410 (SUPT5H)
RNA polymerase I system
102033410 (SUPT5H)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
102033410 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW2_Spt5
KOWx_SPT5
KOW
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW7_SPT5
Ribonuc_P_40
DUF150_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-GeneID:
102033410
NCBI-ProteinID:
XP_014167151
LinkDB
All DBs
Position
Un
AA seq
384 aa
AA seq
DB search
HVRGYLYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVTNLKPKAWV
RLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAKCKKFKRPPQRL
FDAEKIRXGRARGPKNAKIPPKMGLIPPKMGRKGFLFKSFAMSAVITEGVKPTLSELEKF
EDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHED
LKDMLEFPAQELRKYFRMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPR
DLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVT
RKKDNRFAVALDSEQNNIHVKDIV
NT seq
1153 nt
NT seq
+upstream
nt +downstream
nt
cacgtgcgcggttacctgtacgtcgaggcctacaagcagacgcacgtcaagcaggccatc
gagggcgtgggcaacctgcgcctgggctactggaaccagcagatggtgcccatcaaggag
atgaccgacgtgctcaaggtggtcaaggaggtcaccaacctcaaacccaaggcctgggtg
cgcctcaagaggggcatctacaaggatgacatcgcccaggtggattacgtggagcccagc
cagaaccagatctccctgaagatgatccccaggatcgacttcgaccggatcaaagccagg
atgagcctgaaggactggttcgccaaatgcaagaagttcaagcggccgccccagcgcctc
ttcgacgccgagaagatccggtagggccgggcccgagggcccaaaaacgccaaaatccca
cccaaaatgggtcttatcccacccaaaatgggccgcaagggcttcctgttcaagagcttc
gccatgtcagccgtgatcacggagggcgtcaagcccaccctgtccgagctggagaaattc
gaggaccaacccgagggcatcgacctggaggtggtgaccgagagcacagggaaggagcgc
gagcacaacttccagcccggcgacaacgtggaggtgtgcgagggcgagctcatcaacctg
cagggcaagatcctcagcgtggacggcaacaagatcaccatcatgcccaagcacgaggac
ctcaaggacatgctggagttcccggcgcaggagctgcgcaagtacttccgcatgggcgac
cacgtgaaggtgatcgcggggcgcttcgagggcgacaccgggctcatcgtcagggtggag
gagaacttcgtgatcctgttctcggacctgaccatgcacgagctgaaggtgctgccccgg
gacctgcagctctgctccgagacggcctcgggcgtggacgtgggcgggcagcacgagtgg
ggggagctggtgcagctggacccccaaaccgtgggcgtgatcgtgcgcctggagcgggag
accttccaggtgctgaacatgtacggcaaggtggtgacggtgcgccaccaggcggtgacc
cgcaagaaggacaatcgcttcgccgtggcgctggactcggagcagaacaacatccacgtc
aaggacatcgtca
DBGET
integrated database retrieval system
