Geospiza fortis (medium ground-finch): 102033560
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Entry
102033560 CDS
T03755
Symbol
MSH6
Name
(RefSeq) mutS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102033560 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102033560 (MSH6)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102033560 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
HVO_0758
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
102033560
NCBI-ProteinID:
XP_014164625
LinkDB
All DBs
Position
Un
AA seq
1232 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWISVKYLKPYKGSSDKET
MKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEVEEMSENASGN
SEDCNSEEDVKSNKRVMSRERAVKGKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTETEAESVAESPVKVPSKRKRREVKKPAKRSSLGNDCSETPKRAAAVSSEAK
SKLTSFAAPESFESQANACSGGTGGFSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTL
YVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTW
AHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCRSAGHSSRFDKVVRSVKEKE
DTAGTRLYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKI
LKGSLVSCMQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNCENGCSLPSVIKSLTSESDS
LGLTPGENSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDIATAKTMSSSSLFGR
TGQRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSI
NDRLDAVEDLLEVPDKMSEVTEYLKKLPDLERLLSKIHSIGSPLKSENHPDSRAIFYEEL
KYSKKKIADFLSTLEGFKVMNEIVEFMEEFASDFKSRVLRQLVTRRTTNPDGRFPDLSAE
LTRWDTAFDHNQARKTGVITPKLGFDPDYDGALEDIRSLEEDLRKYLDKQRKLLGSKSVQ
YWGTGKNRYQMEIPESVISRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAA
LKDCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPTDNTPP
FLELRNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAG
LLVVMAQLGCYVPAESCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHS
LVLVDELGRGTATFDGTAIASAVVEELAQRIRCRTLFSTHYHSLVEDHSHSQAVRLGHMA
CMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKTTI
SLRIFRYLCQVVDGATCEANAVRKLTAMIDRL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctatccctggtggccgtgtctcatttacaaccaccccacggaaaggacgata
gtcagaggaaaaggaaaatccactcgtgtccacgtgcagttctttgatgacagccctacg
aggggttggatcagtgttaagtacctgaagccatataaaggttcatcagacaaggagacg
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtgctggca
gatgatgccatgagcaaagataaaaccaagaggcttgaactggcagtatgcaatgagcct
tcagacacagaggaggaagaggaagaagtggaggagatgagtgaaaatgcatcaggcaac
agtgaagactgcaatagtgaggaggatgtgaaaagcaataagcgagtgatgagcagggaa
agagctgtgaaagggaagagaaggagagtgttggattctgacagtgaccacgatggctct
gatgtggagttcaagcctgatgggaaagaagcagccagcagtgaggaagccagtagtggg
gtggatgaaaatgagtcttctgacacagagacagaggcagagagtgttgcagagagcccc
gtaaaagtcccttctaaacgaaagaggagagaggtgaaaaagcctgctaaaaggagtagc
ctgggaaatgactgttctgaaacgcccaaaagagcagcagcagtgtcttcagaagccaag
tctaagctgacatcctttgcagcacctgaaagttttgaatctcaagcaaatgcttgcagt
ggaggcactggtggcttctcggtgtgggagcacgaaaagctggactggctgcaggaaggg
aagaggagggatgcgcacaggaggcgtcagggtgaccctgactacgacccctgcactctg
tacgtgcccgaggattacctcaacaagtgcacgccgggcgtaaggaggtggtggcagctc
aaaagccagaacttcgacgctgtgatttgctacaaggtgggaaagttctacgagctgtat
cacatggacgcggtcaccggcgtcaatgagctgggcctgatcttcatgaagggcacctgg
gcccactcgggctttccggagaccgcgttcggccgcttctccgacgtcctggtgcagaag
ggctacaaggtggcgcgcgtggagcagacggaaacgcccgaaatgatggaagcgcgctgc
aggtccgcgggccactccagcaggtttgacaaggtggtgcggagcgtgaaggagaaggag
gacacggccgggacgcgcctctacggcgtctgcttcgtcgacacctccatggggaagttc
cacgtcggccagttcccggatgatcgccactgctccaggtttaggactttggtcgctcac
tacacccccgtgcaggtgctgtttgagaaggggaacctgtctgtggacacacagaagata
ctgaagggctcgctggtttcttgcatgcaggaagggctgacctcgggttcccagttctgg
aatgcatctaaaacactaaaagtccttcttgaggaaggatatttcaaggagaagcagaat
tgtgaaaatggatgttctctgccctctgtaatcaaatctctgacttcagagagtgactcc
ctgggattaactcctggtgaaaacagtgaattagctttgtcagctcttgggggatgcgtc
ttctatctcaaaaaatgtttgattgatcaggagctgttatcacaggcaaactttgaggaa
tatgtccctgtggatattgctactgcaaaaaccatgagttcaagtagtttgtttggcaga
actggccagcggatggtgctggatggagtcaccctgatgaacttggaagtcctgcagaat
ggaactaatggaagcacagaaggtactttgttggaaaggattgattcttgctgtacgcca
ttcgggaagcgactcctgaaacaatggctctgcgctcctctttgtaatcctaaatccatc
aatgatcgtttggatgctgtcgaggacctcctggaagtgccagataaaatgtctgaagtc
actgagtacctcaagaaactgcctgaccttgaaagactgctcagcaaaattcacagcatt
gggtccccactcaaaagtgagaaccatcctgacagcagggccatcttctatgaagaactc
aaatacagcaagaaaaaaattgctgactttctgtctaccctggagggattcaaagtaatg
aatgaaattgtcgaattcatggaggagtttgccagtgacttcaaatccagagtcctgagg
cagctggtcacccgcagaaccacaaatcccgatggccgcttcccagacctgagtgcagag
ctcaccaggtgggacactgcctttgatcacaaccaggctcggaagacaggagtgattacc
cccaagctgggctttgaccctgattatgatggagcactggaggatatcagatctctcgag
gaggaccttcggaagtacctggataagcagcgcaagctgctcgggtccaaatccgtgcag
tactgggggacaggcaagaaccggtaccagatggagatcccagaaagtgtcatctcccgt
aacctgcccgaggagtacgagctgaggtccagcaggaagggctacaagcgctactggacc
aaggagatcgagaagatgctggctgccatggtgaacgccgaggagcgccgcgacgctgcc
ctcaaggactgcatgaggcgcctcttctacaacttcgacaagaacagcaaggactggcag
acagctgtggagtgcattgctgtgctggatgtcttgatgtcccttgctcactacagtcaa
ggtggtgatggacctctgtgccgacctgtaatcctgctgcctacggataatactcctccc
ttcctggaactcagaaattcccgccatccatgcatcacaaaaactttctttggggatgat
tttattcccaatgacatcgtgataggcatcaaggacgaaggcagcagcagtgaggcctcc
tgtgtgctggtaactggccccaacatgggtggcaaatctacgctcatgagacaggctggt
ctcctggtggtcatggcccagctggggtgctacgtgcccgcggaatcctgcaggctcacg
cccatcgaccgcgtgttcacgcggctcggcgcctccgacaggatcatggccggtgaaagt
accttctttgtcgaattgagtgagacttccagcattctccagcatgcaacagagcactcc
cttgttctcgtggatgaactgggcagaggcacggccacgtttgacggcacagccatagcg
agcgcggtggtggaggagctggcgcagaggatccggtgccggacgctgttctccactcac
taccactccctggtggaggaccattcccacagccaggccgtgcgcctgggacacatggca
tgcatggttgaaaatgagagtgaggatccaagccaggaaacaattacattcctgtacaag
ttcattgaaggagcctgcccaaagagctacggattcaatgcagcaagacttgcagatatt
ccagaggaagtcattcagaaggggcacagaaaagccaaagagtttgaaaaaacaaccatc
tcactgagaatatttaggtacctgtgccaggtggtggatggagcaacctgtgaggcaaac
gcggttcggaaactcacggcgatgattgaccggctttag
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integrated database retrieval system
