Geospiza fortis (medium ground-finch): 102033604
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Entry
102033604 CDS
T03755
Symbol
CFAP54
Name
(RefSeq) cilia and flagella associated protein 54
KO
K25553
cilia- and flagella-associated protein 54
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gfr03037
]
102033604 (CFAP54)
Cilium and associated proteins [BR:
gfr03037
]
Motile cilia and associated proteins
Sperm associated proteins
102033604 (CFAP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFAP54_N
Ribonucleas_3_3
Motif
Other DBs
NCBI-GeneID:
102033604
NCBI-ProteinID:
XP_014162724
LinkDB
All DBs
Position
Un
AA seq
3084 aa
AA seq
DB search
MCHTCGGCEQKSCQENAASLEEEEAAPRGLASRPKGLPEPLRLGQGRKGAFARFIFTRSL
AAFPLGFAERFSSSLRANTLFNIWIKYKPRLPEWYYNERLVKVGDTLAQIKEYKLALQQC
YERYLQQFVSVNLDDVMDDVQRFKSAFFPNGVRDKNAALMFHVLQARNVCIYQMVCSRDR
NLQNGESLQTCLNALTSLRLTMQVALPQEDLCWLIYNGTIHIYTICRHLMVMGHSAKVLE
YLLWASICMESSIPLLSVHYLTWRATLYTAVSQCYFDCQAGIHGEIFARRGLIKIDELKQ
LEDISSSLEHTETEKIFREATLKMSVMIFKRAVYESRKKSNSFRRESKVNPRKAVNVSWP
RTTTERLLVAMFDGAAAQFLAILEALSDPSRNLLPPHPPVPDEVQIPEVTSELFSAGLEI
LSESSGTNHFGIINPSSSLLQLMLAGEEGVSGEAAVKFVKLAFSYEEWNVFYSAFEFVDN
FLQAQDDPTWKKAELELKLLTLMQPIVLPGRFERSFSITDGSKSKEGSTRRGSEKTRTIR
KESLKPGDPFRDLRILATTTFSYVSTFEQNVHPGKEILVDVVMCLWQKCKTELQQIQKSG
SHCLEYIHKHQAYQWVHILWIMNEIIEKSNIADTNVMFAEITLCLAAILENVADSTSESK
DKEGGSASLSQDETCDIPEILMKTPTEQLQIAYEVLEKAINDMNTSRLMTILPDGKSIFD
SCCTKVDSNDQNLNSVLGCGDDKTGTDNGFVADLHLELIQAQHRVSVKLLKITQGAQVVH
RSSKSRKSQEKNVEDFQYLSEELIMKKIKRNKLSRAIFLMQKAAQKFPEDLTTTSQRQLL
EEALTLIEQVEAEQSALYRSLKEAMNSKKKSRTPPPPLLLSRSHCSMTFKPAPFDSDIQV
SWYCILGCVAGGSNMKVRLNSNKLPNSGEQILADGKILLEVQGLDANEKYIFAVAAYSSD
GKLIGDAIGQMTKPILAYPPLSATTVRAYLTQVAYQTGNFRLARAAFSPMWDYFVSNSSP
WPPNAAVISASSNFTISEKRLHFEAVSQTSPITLHLFLRNIFAVSDINVMEGALFCDSIS
SNEIFYKEQVARLAECERMTVAIELSNWMNDPSYALQSVVQCYGLLAPLIYHKIFSVPVV
QILIKCLAVLQEIPSATLQRRQEGCYDSIQHMIACASYHTAKVLHSWKEYELSVIIINYG
KKLLISPGVSPGQSGDVKAEETRTGKARRSSRASHLAAMAKAAENLNSLESSLLKLTEAG
PGTQLTGKESPLLLYPVISCWPSERAYREVLKFKGHTRFLEFFVYLLHKVMNEEKFQSVL
EWAESVENNLKRRNESFLGTDGISAQARSLTLGESTSAAGVQKGKNTSPSGKPKASPSKK
PTKQAVPQKGPLREYLMKNPDVMKSSEAQNKAKDKLKKLAHETLVMLLTKYVIRSHFCQM
CLEEMPWKSQMNIYLALAHYHLFKKNLEGQYNIGISGSQHLDSYDILDPEIFSLNSSGTV
LAREAADDNTGKPTPSLLEKSEETETQTSTSKSPKTRNKQSRTPRSRTAKTDKQDQVPSN
ALLLKHFTSIFLHLKRAVVLAHRGGHWTLLQNACRDLWSYTQEFQVIANQSHSHTGAFPI
TWDLLSNTIWLPFYFASDMIIDMIIDLQASSSLKIVDPEGEFCIPSCLGGIVDENGGSSL
HPQPPMDDVNVVDLRWICNLVLKTIELLYHMKKWEALVHIAVQFNIFTHERFTEQVSPLL
VYAQRQLLERIQQFSGSDSHESHFTKYLSDDAQKMRCRNYIGYKLQLPSSTSPTICLLLX
MELSLDHNQAKALVSVPLDVNDTLKCFKETLEKSKYQSRALRHSRKLLSLFLAHTQGILE
MSSQRDLKVQALHELGNLHFYAGNKRAAFKYWCQSLDETLNIADALNTWQELSFPKDATD
CFAVGRSTDISEKFLSQAGVWGCLHAAVLVAKIAQYITTSKIRLRTKYSYFSAILFKTLF
RASLPHPTADCDFAQYETNILIPGIDLFSDRYRADISTVVASLNFIMFELHCAKQNLIIL
PLFTLYQYIVSEICKDSAKCIEGRILKIKVLTDIGFFTEAFHELSLLISGERIPWKIPAG
YKCTEQVQASQKFDTSKSLMTDTNLQVLEDTFNCSLSLTVASLCDPQMMNKLTLAKMHLI
ISLSATINNIPEKVEKNLYFVDNDNLPEPSKTTASNVKADADQDSRQQEQGDRMVHLVDC
KDELNMAMLKGILLTEAEETLSCLVQDIQEKYDGDISRYSVEDLEALIEAKLELASISHQ
RHQAPLSVALAFSAIRLLQDAKVFCVDVAHFQEEKDEREHLDSTTEGVSLPPRVTAQGHM
NVHLWLRCRAMLVTALMAQIHGIGEKKGNDVAERRSVIKEVILEAEAFGDIETQAEMMVQ
AAILDLQEKRPVADIKLLLQNIIGLLQEDIFISLPASLTFVKSVLLLADILPLQVVEDSE
HCSSAVEPFNLLVLAHKLTIKAIFDCGELIEWQGEDSTLSCLVLPLKNIYLPHINLLALV
KMKIGHTLAEKVASTAARHPLQWLHALRHLESALNLCRAAAAKKIDLEVELLFQMGKVKR
QTRETGSKSSQAVETLFEAIKLSQQHHQKYELVRRSYLEIALSYFRFAESNEDESETDNS
VPSKLSTNSEDRASEDAMKSEAYKAQAWIAIRAASQVSEVMLASQLLIGMKSVKELNMKD
EVQQKIPEFASMDLFSSYRDFISANATGVSPDSSVSQYKNNRKRRKAIMDTMLSLKLPKN
LKETESLVTEASWKKDTITWVLIIRYHNHLKRIYNTILPGAGSLSGRDGHLGLISDTGIV
LRIAEMHSFLEKYLLEYSLCCPENFPAELHDVEIPLSDTTDSSEMSLDISEITSEVSHVR
TASPVSVAEYEKTESRATVAPDREINIQWYIPPMAKESNDTETKVLLLYAYNTNPIRISD
ISSTSMFSGYLWIPLARIISLREKLSDLKEQIELSMQASKSFSTARRTSFHEQNETLKII
PSFKHKRSDAKVHLDGKIEEIAKRCLSEVKALLSVDPALSSPLTEIPFDVTLQSIANLKD
MFDLANGCIITDGSLFNWIISLLR
NT seq
9255 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcatacgtgcggaggctgcgagcagaagagctgtcaggagaacgctgcctcgctt
gaagaggaggaggcggcgccccggggccttgctagccgtccgaagggtctccccgagccg
cttcgcctagggcagggtagaaaaggggcatttgctcgcttcatttttacccgttccttg
gcagcgtttccacttgggtttgcagagcgatttagttcatctctaagagcaaatactttg
tttaacatttggatcaaatataagccacgactaccggagtggtattacaatgaaagactt
gtgaaagttggtgatacccttgctcagatcaaagaatataagctggcacttcaacagtgt
tatgaaagataccttcagcagttcgtttctgtaaaccttgatgatgtcatggatgatgtg
cagcgctttaaatctgccttttttccaaatggtgtcagagataaaaatgcagcacttatg
ttccatgttttgcaggcaagaaatgtttgcatttatcagatggtttgcagcagagacaga
aatcttcagaatggagagtccctgcagacttgtctcaatgccttgacctcattacgactc
actatgcaagtggctctacctcaggaggatttgtgttggcttatctacaatggtactatc
catatttacaccatatgcagacatttgatggtgatgggtcattctgctaaggtcctggaa
tacttactgtgggccagtatatgtatggaatcatccattccacttttatctgtgcattat
ttgacatggagagccaccctatatacggcagtttctcagtgttattttgattgtcaagcc
ggcattcatggagagatatttgctcgccgtggtttgattaagattgacgaactgaagcaa
ttagaagatatcagttcttctctggaacatacagagacagaaaagatttttagagaggcc
actctaaagatgtcagtaatgattttcaagagagcagtatatgaatccagaaaaaagtcg
aacagctttcgacgtgagtcaaaagttaacccaagaaaagcagtaaatgtgtcatggcct
cgcaccactaccgagcggctgctggtggcaatgtttgatggtgctgcagctcagttcctt
gccatcctggaagcactgtctgatcctagcaggaatctattgccccctcatcctcctgtt
cctgatgaagtgcaaattcctgaggtcacttctgagcttttttctgcaggcctagaaatc
ctctcagagagcagtgggaccaatcactttggtataattaatccatcatctagtcttctg
cagttgatgctagcaggagaagaaggggtgtctggagaggctgctgtgaaatttgtaaaa
ttagctttcagctatgaagagtggaacgtgttttattctgcttttgaatttgttgataat
tttcttcaggctcaagatgacccaacatggaagaaagctgaactagaactcaaacttctt
acactcatgcaaccaatagtactcccaggaagatttgaacgtagtttttctattactgat
ggcagtaagagcaaagaaggcagcacacgtcggggttctgaaaagacacggacaattaga
aaggaatccttaaagcctggagatccttttcgtgatcttaggattttggcaacaacaaca
ttttcctatgtctccacattcgagcagaatgtccatcctggcaaagaaatacttgttgat
gtagtaatgtgtttgtggcagaagtgtaaaacagaacttcagcaaatccaaaagagtgga
agtcactgcttagaatatatccacaaacaccaagcttaccaatgggttcatatactctgg
ataatgaatgaaataattgagaagagcaacatagcagacactaatgtaatgtttgcagag
ataactttatgtctagctgcaatactggaaaatgtagctgattctacaagtgaatctaag
gacaaagaaggaggaagtgcttctctttcgcaagacgaaacatgtgatattcctgaaata
ctgatgaaaacacctacagaacaattacaaattgcttatgaagttcttgaaaaagcaatt
aatgacatgaacacatctcggctaatgaccattttaccggatggaaagtcgatatttgac
agctgctgtacaaaggtggactcaaatgatcagaatttgaattctgttttgggatgtggt
gatgataaaacaggaacagataatggttttgtggcagatttacacttggagctcattcag
gcccaacatcgagtatctgtgaaacttcttaaaattacacaaggtgctcaagttgttcac
agaagttctaagtctcgtaaatctcaggagaagaatgttgaagatttccaatatttatca
gaggaacttataatgaaaaaaattaaaaggaataagctatccagagcaatctttttgatg
caaaaggctgcacagaagttccctgaagacttaactactacttcccaaaggcagctactg
gaggaagcactaactttaattgagcaagttgaagctgaacaaagtgcattgtatcgcagt
ctcaaagaagctatgaacagcaagaaaaaaagcaggactcctcctcctcctctgttactt
tccagatcacattgctccatgacatttaaaccagccccatttgattcagatattcaggtt
tcatggtactgtattttgggctgtgtagctggaggaagtaatatgaaagtaaggttaaat
agtaataaacttccaaattcaggagaacagatactggcggatgggaaaattctcttagaa
gtccaagggttagatgccaatgagaaatacatatttgctgtggcagcatattcatcagat
ggaaaacttattggggatgccattgggcaaatgactaagccaatccttgcctatccaccc
ctttctgctactactgttcgagcgtatctaactcaggtagcctatcagacaggcaacttc
agattagccagagcagcattttcaccaatgtgggattactttgtttcaaattcttctcca
tggcctcccaatgcagctgtaatttctgcaagcagtaatttcactatatctgaaaaaagg
ttacattttgaagctgtatctcagacttctcctattaccttgcacctctttttgaggaat
atatttgctgtttctgacattaatgtcatggaaggagcactcttctgtgattccatctct
tccaatgagatattttataaggagcaagtagctagattagcagaatgtgaaagaatgact
gtggcaattgaacttagcaactggatgaacgatccaagttatgccctgcagtctgttgta
caatgttatggtctccttgccccacttatttatcacaagattttttcagtgccagtagtt
cagatcctcattaaatgcttggctgttctccaagaaattccaagtgctactttgcaaagg
agacaggaaggatgctatgacagtattcagcatatgatagcttgtgcttcatatcataca
gcaaaggtactacattcatggaaagagtatgaactttcagtaattatcattaactatgga
aaaaaattgttgatctcaccaggagtttcacctggccagtcaggagatgtgaaagctgaa
gaaacacgcactggcaaagcaagacgttcctcaagggcatcccatttagctgcaatggca
aaagcagcagaaaatctaaattctcttgaatcaagtctactcaaactgacagaagcaggt
cctggaacacagcttacaggaaaggagtctcctttgttactctacccagtaatttcatgt
tggccatcagaacgtgcttatcgagaagtgcttaaattcaaaggccacactcgtttcctt
gagttcttcgtttaccttttgcacaaagtcatgaatgaagagaagtttcagagtgttctg
gagtgggcagagagtgtggaaaataacttgaaaaggaggaatgagagcttcctcggtact
gatggaatttcagcacaagcaagatctctcactctgggagaaagcacaagtgctgcagga
gttcagaagggaaagaatacctcaccttcaggaaaaccaaaggcatcaccttcaaagaaa
ccaacaaaacaagctgtgcctcagaaaggacctctcagagagtatttaatgaaaaatcca
gatgtaatgaaatcttcagaagcacaaaacaaagccaaggataaattgaagaaattagct
catgaaaccttagtgatgctgctgactaaatatgtaatccgaagtcacttttgtcaaatg
tgtcttgaagagatgccctggaagtctcagatgaatatctatctggcccttgcacactac
cacctatttaaaaagaacctggaagggcaatataacattggaattagtggttcacagcat
ctggacagttacgatattttggatcctgagatattctcattaaacagttctggcactgta
ttggcaagggaagctgcagatgataacacaggaaaaccaactccttctctccttgaaaag
tcagaagagactgaaacccaaacctctacaagtaaatctcctaaaaccagaaataaacag
agtcgaactcctcgaagtcgaacagcaaagactgacaaacaggaccaggttccatcaaat
gcccttttactgaagcattttacaagcatcttcttgcatttgaaaagagcagtggttctt
gctcaccgtggtggccactggacattgcttcaaaatgcttgtcgagatctttggagctat
actcaagaatttcaagtgattgctaaccagtcacattcccatacgggtgcatttcccatc
acctgggatcttctttccaacaccatctggttgccattttattttgcatcagacatgatc
attgatatgataattgacctacaagcaagcagttctcttaagattgtggatcctgaagga
gagttttgcattcccagttgtttaggaggtattgtggatgagaatggtggttctagtctt
catccccagcctcccatggatgatgtgaatgtggttgacctgaggtggatatgtaatctg
gttcttaaaacaatagaattgttatatcacatgaagaagtgggaagcactggtacacata
gctgtacaatttaacatatttacacatgagaggttcacagaacaagtgagtccactgctg
gtgtacgctcagaggcagctgctggagaggatacagcagttcagtggctcagatagccat
gaatctcatttcacaaagtatctgtctgatgatgcacaaaagatgagatgcagaaactac
atagggtacaaattacagctgccttcttccacttctcctacaatttgtcttttattataa
atggagctttctttagatcacaatcaagcaaaagccctagtttctgtgcctcttgatgtg
aatgatacactgaaatgttttaaagaaactctagaaaaatccaaataccaaagcagagca
ctgagacacagcaggaaactactttcattatttcttgcacacacacaaggaatccttgaa
atgagtagccagagagacctcaaggtacaggctctacatgaacttggaaatcttcacttt
tatgctggaaataaaagagctgcttttaaatactggtgtcagtcccttgatgaaacactc
aacattgctgatgctcttaacacctggcaagagttaagttttccaaaagatgctacagac
tgctttgcagttggaagatcaactgatataagtgagaaatttctttctcaggctggagtt
tggggatgtttacatgcagcagtcctagtggctaagatagctcagtatataacaacatca
aagataagattaagaacaaaatacagctatttttctgcaatcctttttaagactctgttt
agagcttctcttccacatccaacagctgactgtgactttgcacaatatgaaacaaatatt
cttattcctggtattgacctgttctctgatcgctacagagctgatatctctactgtagtt
gcaagtctgaatttcattatgtttgaactacattgtgcgaaacaaaatttaataatttta
cctctgttcacattataccagtatattgtatctgagatttgtaaggattcagctaaatgt
attgaaggaagaatcctcaagattaaagtacttacagatataggattttttacggaggcc
tttcatgagctgtctttgcttatttcgggagagagaattccatggaaaataccagcagga
tacaaatgtactgaacaagtgcaggcctcacagaaatttgatacctcaaaatctctcatg
actgatacaaatttgcaggtactggaagatacatttaattgcagtctgtctttaacagtg
gcatcactgtgcgacccacaaatgatgaataaattaaccttagccaaaatgcatctcatc
atttctctttctgccacaataaataatatacctgaaaaagttgaaaaaaatttatatttt
gttgacaacgacaacttaccagagccaagcaaaactacagcatcaaatgtaaaagctgat
gctgatcaggattcaagacaacaggaacaaggagacagaatggtgcatcttgttgactgt
aaagatgaattaaatatggccatgctgaaggggattttattgacagaagctgaagaaact
cttagctgtcttgtacaggacatacaggaaaaatatgatggggacatatctcggtattct
gtggaagatttagaggctcttattgaggccaaacttgagcttgcttctatttctcatcaa
aggcatcaagcacctctcagtgttgctttggctttctctgcaattcggcttctccaagat
gccaaagttttttgtgtggacgtggcacattttcaagaggaaaaggatgaaagggagcat
ttggactccaccacagaaggtgtttcactccctccccgtgtaacagcacaagggcacatg
aatgtacatttgtggctgaggtgtcgagcaatgttagtgactgcactcatggcacagata
catggtattggtgaaaagaaaggaaatgacgtggctgagcgcagaagtgtgataaaagaa
gtaatattagaggcagaagcctttggggatattgagactcaggctgaaatgatggtgcaa
gctgctattcttgacctgcaagaaaaacgtcctgtggcagacattaaacttcttttgcag
aatatcatcggtttactccaagaggatatatttatttccctgccagcttctttgactttt
gtgaaaagtgtgcttctgctggcagacatactgccactgcaagtagtagaggactcagaa
cattgctcttctgctgtggaaccatttaacttgcttgttttggcacataagcttaccatt
aaagcaatttttgattgtggtgaactcattgaatggcaaggagaagacagtacattgagt
tgcctggtcctacccttgaagaatatctacctgccgcatattaacttgctagccctagtc
aaaatgaaaattggacacacattagctgaaaaagtagcttccacagctgcaagacatccc
ttgcaatggctacatgctctcaggcatttagaatcagcattgaatctttgcagagcagct
gcagcaaaaaaaatagatttggaagttgaacttctttttcagatgggtaaagtaaaacgc
cagacaagagaaacaggcagtaagtcatctcaagctgttgaaaccctgtttgaagctatt
aagctcagccagcaacatcatcaaaaatatgagttggtaagacggtcgtaccttgaaata
gcactatcctatttccgctttgctgaaagtaatgaggatgaatcagagacagataattcg
gtgccttccaaattaagtaccaattctgaagatcgggcttctgaggatgctatgaaatca
gaagcgtacaaagcacaagcctggattgcaataagagcagcttcacaggtcagtgaagtt
atgcttgcttctcagctgttaattggaatgaagagtgttaaagaactgaacatgaaggat
gaagtccaacaaaaaatcccagaatttgcttctatggatcttttttcttcatacagagat
ttcatatctgcaaatgcaacaggtgtttctcctgatagttctgttagccaatacaaaaac
aatagaaaacgtagaaaagcaataatggatacaatgttatctctgaaactcccgaagaat
ctcaaagaaacagaaagtcttgtcaccgaggccagctggaagaaagatacaataacatgg
gttctcatcattcgctaccacaatcatttgaaaagaatttataacacaatcctacctgga
gctggatcactttctggacgagatggacaccttggtttgatttctgacacaggaattgtt
ctacgcatagcagaaatgcattccttccttgaaaagtatttgttggaatattcattgtgt
tgtcctgagaattttccagcagaactacatgatgtagaaataccactcagtgatacaact
gattcttcagagatgtctcttgatatttctgaaattacctcagaagtgtcacatgtgaga
acagcttctccagtttctgttgcagaatacgagaagacagagagtagggcaacagttgct
ccagatagggaaattaacattcagtggtacattcctcctatggcaaaggaatcaaacgat
acagaaactaaggttttgttgctttatgcttataatacaaaccctatcaggattagtgac
atcagttcaacgtctatgttttcaggctacttgtggattccattggctagaattatttct
ttaagggagaaattgtctgatctgaaggagcaaattgaattatcgatgcaagcttctaag
agcttttcaactgcacgacgtacaagttttcatgagcaaaatgaaactttgaaaataatt
ccttcgtttaaacacaagagaagtgatgcaaaagtgcatctcgatggtaaaatagaagaa
attgctaaaaggtgtttatctgaagtcaaagcactgctttctgttgatccagccctgtcc
tctccattaactgagatcccatttgatgttactttgcaatcaatagcaaatttgaaagat
atgtttgatcttgccaatggatgtataataactgatggaagtcttttcaattggatcatt
tctctgcttcgctaa
DBGET
integrated database retrieval system
