Geospiza fortis (medium ground-finch): 102033659
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Entry
102033659 CDS
T03755
Symbol
PDZRN4
Name
(RefSeq) PDZ domain containing ring finger 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gfr04121
]
102033659 (PDZRN4)
Enzymes [BR:
gfr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102033659 (PDZRN4)
Ubiquitin system [BR:
gfr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
102033659 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
102033659
NCBI-ProteinID:
XP_005419320
UniProt:
A0A6I9HFW1
LinkDB
All DBs
Position
Un
AA seq
777 aa
AA seq
DB search
MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRAPAAK
AHSGSQDVRLMDASTQTDITFEHIMALAKLRPSTPPVPDICPFLLSDSCHSLHPVEHEFY
EGNEYLSSLPADADRAEDFEYEEVELCRIGSQEKLGLTVCYRTDDEEDTGIYVSEVDPNS
IAARDGRIREGDRILQINGQDVQNREEAVALLSSEECRKIVLLVARPEMQLEEGWLDDER
NEFLEELNLEMLEEQHNEVMQYTANEVEQPKKHEEEDGTTDTATSSSNNHEKDSGVGPTD
ESLRNDESSEQENAAEERNGATLQSKRDLGHSQDTLGSVELQCNDSFVSGEYIESDFIGN
PEEECERFRQLLELKCKIRNHGEYDLYYSSSMIECNRRDQDGVEHELQLLNEELRNIELE
CQNIMQAHRLQKVRDQYGDIWSLHDESFRNYNTSTDVQRGKLDDIMEHPEKSDKDSSSAY
NTAESCRSTPLTVEQSPDNSLQRVISITNRKNLRTTIVANQSSSGQSSRETTSAKTKPTE
QTSAAENAVLASESSKFTDQDRQGSEHIPYLSPYHSSSYRYGNIPAHARHYQSYMQLIQQ
KSAVEYAQSQLSLVSMCKDSQKCMEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIK
EERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGS
EGKKEINIIELSHKKMMKRRNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcacttttcagaagagagaagagcactacaaactgctctatgaa
gtttcacaggtcaatgggaaggacctctccaaggccactcacgaggaagccgtggaagct
ttccgcaatgccaaggagcccattgtagttcaggttttacgacgagccccagctgccaaa
gctcacagcggctctcaggatgttcggctcatggatgccagcactcagactgacatcact
tttgagcatatcatggctctggccaagctaaggccttccacaccaccagttccagatatc
tgcccttttctactttcagatagctgccattctcttcacccagtggagcatgaattttat
gaaggcaatgagtatctttccagcctgcctgctgatgcagatagagcagaggactttgag
tatgaggaggtggagctgtgccgcattggcagccaggagaagctggggctgactgtctgt
tacagaaccgatgatgaggaggacacgggaatctatgtcagtgaggttgatccaaacagc
attgctgccagagatggacggatccgtgaaggagaccgcattttgcaaataaatggccaa
gatgtccagaatagggaagaggcagtggcgttgctctccagcgaagaatgcaggaaaatt
gtgttgctggtggcgaggccagagatgcagctggaggaagggtggctggatgatgaaagg
aatgaattcttagaggagttgaacttggaaatgttggaagagcagcataatgaagtgatg
cagtacacagccaatgaggtggagcagccaaagaaacatgaagaggaagatggcactaca
gacactgcaacctcatcatccaacaatcatgagaaggacagtggggtgggacctacagat
gaaagtcttcgcaatgatgagagctcagagcaagaaaatgcagctgaggagcggaacggt
gctaccctgcagagcaaacgggatctgggccacagccaggacaccttaggcagtgttgag
ctccagtgcaatgacagctttgtgtctggggaatacattgaatctgatttcataggaaac
ccagaggaggaatgcgaaaggtttcggcagctgttggaactgaagtgcaagattcgaaac
catggggagtatgatctttattactcaagcagcatgatagaatgcaacagaagagaccaa
gatggagtggagcatgagctgcagctactcaatgaggaactgaggaacattgaacttgaa
tgccagaatattatgcaagctcaccggctccaaaaggtgagagaccagtatggagacatt
tggtctttacatgatgaaagtttcaggaattataacaccagcacagatgtacaaagaggc
aaactggatgacatcatggagcaccctgagaaatctgacaaggacagctccagtgcctac
aacactgctgaaagctgcaggagcactccgctgactgtggagcaatcccctgataactct
ctccagagggtaatcagcataaccaacaggaaaaacctgaggaccacaattgttgctaat
cagtcatcctcaggacaaagcagtagggagacaacctcagccaaaaccaaacccaccgag
caaaccagtgctgctgagaatgcagtgctggcatcagaaagcagcaaattcacagaccag
gacaggcaaggcagcgagcacattccctatttgtctccatatcacagttcttcttacagg
tacgggaacatccctgctcatgcaaggcattatcaaagctatatgcagctgatccagcag
aagtctgctgtggagtacgcccagagccagctcagcctggtgagcatgtgcaaagactca
cagaagtgcatggagcccaagatggaatggaaagtgaaaataaggagtgatgggacgagg
tacatcacaaagagaccagttcgagacagaatcctgaaggaacgtgccttaaaaattaaa
gaggagcgcagtgggatgacgacagatgatgacacaatgagtgagatgaagatgggtcgc
tactggagcaaagaggagcggaagcagcatttggtgcgcgccaaggagcagaggaggcgg
cgggagttcatgatgaggagcaggctggagtgtcttaaggaaagtccacagagcggcagc
gagggcaaaaaagaaatcaacattattgaactgagtcacaaaaagatgatgaaaaggaga
aacaagaaaatcttggacaactggatgacaatacaagaactgatgacacatggtgctaaa
tccccagacggcacaagagtgcacaatgcctttttatcagttactactgtatga
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