Geospiza fortis (medium ground-finch): 102033969
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Entry
102033969 CDS
T03755
Symbol
TRUB1
Name
(RefSeq) TruB pseudouridine synthase family member 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gfr03016
]
102033969 (TRUB1)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
102033969 (TRUB1)
Transfer RNA biogenesis [BR:
gfr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
102033969 (TRUB1)
Prokaryotic type
102033969 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
DMA
Motif
Other DBs
NCBI-GeneID:
102033969
NCBI-ProteinID:
XP_005428699
LinkDB
All DBs
Position
Un
AA seq
251 aa
AA seq
DB search
MEPFLARCATGGSEAGVQAKGNKRKQVLKIGHGGTLDSAATGVLVVGIGKGTKMLGTMLA
GSKKYTAIGMLGKATDTLDATGKVTEEKPYDQVTKGDLENVLQKFTGDIMQVPPLYSALK
KDGERLSTLMKRGEAVEAKPARPVRVYSLSLQQFQPPLFTLDVECGGGFYVRSLVNDIGK
ELSTCASVQELTRTKQGPFTLEEHALHEDKWTIDEIAQSLEHCTALLLGEPARKKLKTEH
PGETAVICEDK
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggagccgttcctggctcgctgcgccacgggaggttcagaagctggtgtgcaagcaaaa
gggaacaaaagaaaacaggttttgaaaattggacatggaggaactttggacagtgcagcc
acaggagttctggtggttggtattggaaaaggaacaaaaatgctggggactatgttggca
ggttccaagaagtacactgccattgggatgctgggcaaggctactgatacattagatgct
acaggaaaagtaactgaagaaaaaccttatgaccaggtaacaaaaggagatcttgaaaac
gttctgcaaaagttcacaggggacatcatgcaagttcccccactctattctgctttgaag
aaggatggagaaaggctttcaactctgatgaagagaggggaggcagtggaagcaaagcct
gctcggccagtgagagtatacagcctttctctccagcagttccagccaccactgttcacg
ctggatgttgaatgtggtggtggcttttatgtcaggagcctggtcaatgacattggcaaa
gagctctccacctgtgcctcggtgcaggagctgacgcgcaccaagcaggggccgttcacg
ctggaggaacacgccctgcacgaagacaagtggacaattgatgaaattgctcagtccttg
gagcactgcacagccctgctcctgggagagccagctcggaaaaaattgaagacagagcat
cctggtgaaactgctgtgatctgtgaggataagtga
DBGET
integrated database retrieval system
