Geospiza fortis (medium ground-finch): 102034109
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Entry
102034109 CDS
T03755
Symbol
FREM1
Name
(RefSeq) FRAS1 related extracellular matrix 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102034109 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
gfr04091
]
102034109 (FREM1)
Lectins [BR:
gfr04091
]
C-Type lectins
Lecticans
102034109 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Beta-prism_lec
Motif
Other DBs
NCBI-GeneID:
102034109
NCBI-ProteinID:
XP_014162421
LinkDB
All DBs
Position
Un
AA seq
2116 aa
AA seq
DB search
MKPFEKGWLLLLLPVMLRVVCSSFISVNLGVKVMKGQSVFLSEEDLNFSIPREKDVCKVE
VINEPITQRVGKLTPQVFDCHFLPNEVKYTHNGCPILDEDMVMLRLYRFTETETFVETFT
LHVQLLEPDCNIIKMRSHALEVPEYYGLSRVIDKNVLTFDYDRKINLECTISIISSETHL
PAHGQLIAGKVQQGQFSGDQPWSFFPGTKHSLGQQCRNRSCALGLGDINKKKMSCEEFLR
MGIQYRHLDPPSPDTDYIPVRLDLSDSRSKTLHKTEYAWLPVQIRGAVPNQIPKAAPMAK
FMLEVDQFILTPITTTTIDAEDNETPKSLLIFNITKPPPQGFITHLSDHTKPIGSFTWKD
LSDMLIAYQPPNNSHTERRNYEVEFEVHDFYFERSLPLTVHLSIRTTDTNAPRVSWNTGL
NLLEGQSRPITWQHFQIVDNDDIQNVRLVTVDGLQHGRLLVRGGKGFMFTVSDIQAGVVR
YHHDDSDSTKDFVVFRIFDGSHSIRHKFPINILPKDDNPPFLISNVVIEVHEGQTILIQR
SMLHASDMDSSDHYILFNITKPPQAGEILKKPGPNLLGYSVNSFLQRDLFNGMIYYHHLG
GEVFEDSLEFVLCDSHDPPNLSEPQVMMVHIIPVDDQLPREAPGVTRHLVVKETEISHLT
KKHLHFIDVEEQDRELTYTITTSPFFSCTHGYSDAGKLFMVDTIPKLVKDPAALALQSFT
QHAVNYMKVAYMPPLQDIGPEPQQVQFVFSVSNQHGGTLYGICFNITILPVDNRAPEVFA
THLRVQEGGMTPITEGHILISDSDTKREHLFLLLQRQPQHGVVELDNIPMNGGDRLSCED
LRTLAVRYRHDGSETLTDEVFFAASDGIHFVEFILHVKVSPVNDELPVMQTGLAPVLHCL
EGEEVVLSSEYIYATDVDSDDMELVFMLAHEPQHGVVRRAGTAVDRFSQADVIAGLVTYK
HTSGEIGLTPCIEILTLIVSDGEAGLDVKGCCYDGPPSPPVSRDDPFPTYDLNITVLPVD
NQPPSIVTGASFVVEEGSSAALTTKYLFATDPDTTADDLEFVLVSPPQFGYIENILPSPG
FEKSNIGISIGSFQLKHLKTMNINYVQARHVRMEPTEDKFVLYVTDGLHLSAETPFFVLI
SPTNDEVPEFIARNITVQEGEMKELDLSVINAVDLDVPQDPLVFGVVQRPSYGFLINGVH
GSDVLHYKELINHDHHSHGLLVHGFSMGLLRNGMKLMYMHDNSENLTDSFKIQLSDGKHK
VLRTISVKVIPVNDEKPVLSKKNDIEVNIGETHIISSAVLSAEDKDTPRERIYYLFERLP
ENGQLQLKVGQGWVTLLTGMNCTQEELDMNLVRYVHTGTVGSKKKDSFTFYLWDGYNRSP
AVDFYINIKDLEKGDIAIFTKLLRVPKGDHSYITTDILLALDGTDRPEELLYVITSPPQY
GQIEYVSYPGIPITSFSQMDVARQIVCYVHKAKAVVHEDMFRFIISNGLRTKHGTFKIAL
EAADQVLPTLSRNMGLRLTEGAMALLTPDVLQLSDPDTAKENLTFLLTQLPQYGHLYYNG
TVLLQYNFTQQDVDNRDVAYKHRGGNFQTDRFTFVASDRTNQGFIVNGRVQSEPVTFTIQ
VDHLDKMAPKIIHLHCFSDVELLKNGNYGIYITARSLRASDPNTEDDKIIFKILRGPHYG
YLENITTGGFIQEGFSQKDLNSKIILYVINKSREVNSDNLEFQVTDASGNSAAPQRLELR
WSRIEMLQTEYEVCENTGVVSLKITRAGHLGESAFITVKVNEISARLGKDFTVTPSKLVQ
FDPGVSTKMWNIAITYDGLEEDDEVFEVVLNSPVNAVLGTRTKAVVKILDSKGEMIRFYT
KRERTKPRHALHDVPPSSVYRNETDVVFKYHGIVSLKIEDDTSSAETNKKAQQQINVISR
KTEIPLSDKAELAAEPRSRHKDLNSFQKACTPDLKGLLHYEESTQKLFQCDGISWKFWNS
QSKEVTMKKCPSGWTYHEGSCYFLVVNHKVTWNTAARACREQYLGSLTSVANEQHMQWLW
DFSGKMPFWIGLNDQVNPGHWEWNGGEPVTYTNWRRGSYHFSVRGRNCVFVQKRGKWQAT
DCKKVKPNSYICSRKL
NT seq
6351 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctttgagaaaggctggctgcttctactgctgcctgtcatgttaagagttgtg
tgctcctcctttattagtgtgaaccttggggtgaaagtgatgaagggacagtctgtcttc
ctgtcagaagaagacctcaacttttccatccccagagagaaagatgtctgcaaagtagaa
gtgatcaatgaaccaataacacagagggttgggaaacttactccacaggtttttgactgc
cacttccttcctaatgaagtcaaatatacccacaacggatgtccgattttagatgaagac
atggtcatgcttaggctgtacaggtttacagaaacggaaacctttgtagaaacattcacc
cttcatgtgcagttacttgagccagactgtaacatcataaaaatgcgctcccatgcgttg
gaggtccctgaatactacggtctgtccagggtgattgacaagaatgtcctcacctttgat
tatgacaggaagataaacctggagtgcaccatttccataatctcttcagaaactcacctg
cctgctcatggccagcttattgccgggaaagtgcagcaagggcagtttagtggagatcag
ccatggagcttcttccctggcactaagcacagcctgggccaacagtgcagaaacaggagc
tgtgcactgggactaggagatatcaacaagaaaaagatgagctgtgaggaatttctgagg
atgggaattcagtatcgacaccttgaccccccttcacccgacactgattatattcctgtg
aggttggatctctcagacagcagaagcaaaactctgcacaagacggagtatgcatggctc
cctgttcagattagaggtgctgttcccaaccaaatacccaaagctgctccaatggcaaag
ttcatgctggaagtagatcaatttattttaacgcctattacaaccacaaccattgatgct
gaagacaatgaaactccaaagtccctgcttatattcaacatcaccaagccacctccacaa
ggctttatcactcacctctctgaccacacaaaacctattggctccttcacgtggaaggat
ctcagtgacatgctcattgcttatcagcctccaaataacagccacacagagaggaggaat
tatgaggtggagtttgaggtgcatgatttctactttgaaaggagtttaccactcactgtg
catctttctatcagaacaacagatacaaatgccccccgggtttcgtggaatacaggactc
aacctcctagaggggcaatcccgacccatcacatggcagcacttccaaattgtagacaac
gatgacatccaaaatgttcgcttggtcacagttgatggcttacagcacgggcggctctta
gtcagaggagggaaaggattcatgttcactgtctctgacattcaggctggagttgtccgc
taccatcatgatgacagtgattctactaaggactttgtggtatttagaatttttgatggc
tcccacagtattcgtcataagtttccaataaatatcctccctaaagatgataaccctcca
tttctgatcagcaatgtggtcattgaagttcacgagggacagacaatcctgattcagcgc
tccatgctccatgcttcggacatggattccagtgatcactacatactattcaatattacc
aagccaccacaagctggagaaatcttgaagaaaccaggaccaaacttgctaggatattct
gtcaacagttttcttcagagggatctatttaatggaatgatttattatcatcatttggga
ggagaagtatttgaagattcccttgagtttgtgctatgtgatagtcatgaccctccaaat
ctttcagagccacaggtgatgatggttcacattatccctgtggatgatcagcttcccaga
gaagctccaggagtgacccgccacctggttgttaaggagactgagatttctcacctaact
aagaaacatctccacttcatagatgtggaagagcaagacagggagctcacatacaccata
accacttccccatttttctcttgcacccatggctactcagatgctgggaagctgtttatg
gtggacaccatccccaaactggtcaaggatcctgctgctcttgcactccagtcatttact
cagcatgctgtgaactatatgaaagttgcttatatgccacccctgcaggacatcggaccc
gaacctcagcaagtccagtttgttttttctgtcagcaatcagcatggaggcactttgtat
gggatctgcttcaatattacaattcttcctgtggataatcgagctccagaggtttttgca
acccatttgagagtgcaagagggtggcatgacccctattacagagggacacattctcatc
tctgattcagacacgaaacgagagcatctcttcctgctcctgcagaggcagccgcagcat
ggggtagtggagctggataacattcccatgaatggaggtgacaggctttcctgcgaggac
ctgcgtaccctggcagtcagatatcgtcatgacggctctgagactctcactgatgaagtt
ttctttgcagcctcagatggcatccattttgtagagttcatcctgcacgtcaaggtgtcg
cccgtgaatgatgagctacctgttatgcaaacaggccttgctcccgtgctccactgccta
gagggtgaagaagtagtcctctcctcggagtacatttatgccacagatgtggacagcgat
gacatggagctggtgttcatgctggcccacgagccgcagcacggggtagtgaggagagct
ggcactgccgtggatcgtttctcccaggctgatgtcattgctggtttagtcacatacaag
cacaccagtggtgagattggtctgactccttgcattgagatcttaaccttgattgtctct
gatggcgaggctggcctagatgtgaaaggctgctgttatgatggacctccttctccccca
gtttcacgtgatgatccctttcctacctatgaccttaacatcactgtacttccagtggac
aaccagcctccatcaattgtaaccggtgcaagctttgtggtggaggagggctcctcagca
gcccttactaccaaatatttgtttgccactgaccctgacaccactgcagatgacttagag
tttgtgctggtttctcctccccagtttggttacattgaaaacatactgccttctcctggg
tttgagaagagcaacattggaataagcataggttcatttcagctgaagcacctgaaaacc
atgaatataaactatgttcaagccaggcatgtgcgaatggagccaacagaagacaaattt
gtactttatgtcactgatgggctgcatctctcagcagagactccattttttgtgctaatc
agcccaaccaatgatgaagttccagagttcatagccaggaatattactgttcaagaaggg
gagatgaaagagctggatctgtctgttatcaacgcagttgatctggatgtgcctcaagat
cctctggtatttggggttgtgcagaggccctcatatggattccttattaatggtgttcac
ggcagtgatgttctacactataaagagttaattaaccatgatcaccacagccatgggttg
cttgttcatggcttttccatgggactactaaggaatggaatgaagctgatgtacatgcat
gacaactctgaaaatctcactgacagttttaaaattcagctatcagatggaaaacataaa
gtcctcagaaccatttcagtaaaggtcattccagttaatgatgagaaaccagtgctgagc
aagaagaacgatatagaggtgaacataggtgaaactcatataatttctagcgctgttctg
tccgcagaagataaagatacccccagggagagaatttactacttgtttgaaagacttcca
gaaaatggtcagcttcagctcaaggtaggacaagggtgggttactctcctaactggaatg
aattgtactcaggaagagctggatatgaaccttgtgagatacgtccacacaggaactgtg
gggtccaagaaaaaagacagcttcacattttacctctgggatgggtacaacagatcccca
gctgtggacttctacataaatatcaaggacttggaaaagggagacattgctatttttaca
aaacttcttagagtgccaaaaggagatcacagctacattacaactgatatcctccttgca
ttggacggtactgacaggccagaggagctcctttatgtgataacctccccgccccagtac
ggacaaatagagtatgtcagctatcctggcatccctattacaagcttcagtcaaatggat
gtagcacgacagattgtctgctatgttcacaaagccaaggcagttgttcatgaagatatg
ttcagattcatcatcagcaatggactgaggactaagcatgggacattcaagattgccttg
gaggcagctgaccaggttttgcccactctatctaggaacatggggttaagattaactgaa
ggagctatggcacttcttactccagatgtactgcagctttcagacccagatactgcgaaa
gaaaaccttaccttcctcttgactcagctcccccagtatggtcatctctattataatggg
actgtgctactgcagtacaatttcacacagcaagatgtggacaacagggatgttgcatac
aagcaccgaggcgggaatttccagactgacagatttacatttgttgcctcagataggact
aaccaaggcttcatcgtgaatgggagggtgcaaagcgagccagtgactttcaccattcag
gtggatcatttggacaaaatggcaccaaaaattattcatctccattgtttttctgatgtg
gaactgctgaagaatggcaattatgggatctatattactgccaggtccctgagggcatct
gaccccaatacagaagatgacaaaataatttttaagattttgcggggtcctcattatggc
tacctggaaaatataacaacaggtggattcattcaggaaggatttagccaaaaggattta
aatagcaaaatcatactttatgtcatcaacaaatcacgagaagtgaattcagacaacttg
gagtttcaagtgacagatgccagtggaaattctgcagcaccccaaaggctggagctacgg
tggtctcgaattgaaatgctacagactgaatatgaggtgtgtgaaaacacaggagtggtg
tctctgaaaatcaccagggcaggacacctgggggagtctgcctttataaccgtgaaggtc
aatgaaatatctgctaggctgggaaaggacttcacggtgactccctccaaacttgttcag
tttgatccaggagtgtcaacgaagatgtggaatatagcaattacctatgacggattagag
gaagatgatgaagtctttgaagtagttctgaactcccctgtgaatgctgttcttggcaca
cggacaaaagctgtagtgaaaattttggactcaaaaggagaaatgatacgcttctatact
aaaagagaaagaactaaaccaagacatgctctgcatgatgttcctccttcatctgtatat
agaaatgaaacagatgtggttttcaaatatcatgggattgtatcactcaaaatagaggat
gacacctcctcagctgaaaccaacaagaaagcacaacaacagataaatgtaatctctagg
aagacagaaatccctctgtctgataaggcagaacttgcagctgaaccaagatcaagacat
aaggacttaaactcttttcaaaaggcttgtacaccagatttaaagggtctcttgcattat
gaagaaagcacacagaagttatttcagtgtgatgggatatcatggaaattctggaattcc
caaagcaaggaggtaaccatgaagaaatgtccctctggatggacttatcatgagggcagc
tgctacttcctggtagtgaatcacaaggtcacctggaacactgctgctcgggcgtgcaga
gaacagtacctggggagtctaacaagtgtagctaatgaacaacacatgcagtggctgtgg
gacttcagtgggaagatgcccttttggataggtttgaatgaccaagtcaatcctggacac
tgggagtggaatggaggagagcctgtaacctacacaaactggagaagaggctcctaccac
ttttcagtgagaggaagaaattgtgtatttgtgcagaagcgaggaaaatggcaagcaact
gactgcaagaaggtcaaaccaaacagctatatatgttcaagaaagttgtaa
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integrated database retrieval system
