Geospiza fortis (medium ground-finch): 102034532
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Entry
102034532 CDS
T03755
Symbol
CHD5
Name
(RefSeq) chromodomain helicase DNA binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102034532 (CHD5)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102034532 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
102034532
NCBI-ProteinID:
XP_014165133
LinkDB
All DBs
Position
Un
AA seq
1899 aa
AA seq
DB search
MEEDDGVLEGLDEFFAEDQVVVQKKKKSKKLKDGKAAKIKRRKKEGSNDEMSENEEEMEE
KSESEGSDYSPNKKKKKKLKDKKEKKPKRKKKDEEEDDNEDGSLKEPKSSAQLMEEWGLD
DVDYVFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS
SAAAAAAAVXXXXXXTISPSLPASPQPSALPTVIRKAKTKEGKGPGVRKKIKGSKDGKKK
GKGKKMAGLKFRLGGISSKRKKGSSSEEEEREESDFDSASINSSSVRSECSAGLGKRGKK
RKKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCP
HCEKEGIQWEPKEEEEEEEDGGEEEEEDDHMEFCRVCKDGGELLCCDTCPSSYHLHCLNP
PLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWRLELYHTVMYRNYQRKNDMDEPPAFDYG
SGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDIHYLIKWKDL
PYDQCTWEIDDIDIPYYENLKLLYWNHRELMLGEDTRPLKKLNKKGKKLKEEKLEKPPET
PLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIV
FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSF
EDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVDEAHRLKNNQS
KFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQI
KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGG
NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLR
DGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL
LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER
ITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMVSQGQRIAM
PDAVTPFSDTLSAKGGAATPGLKKKHGSTPPGDNKDVDDSSVIHYDDAAISKLLDRNQDA
TDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHHYEQQQ
EDLARNLGKGKRIRKQVNYNDTSQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSG
RRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWL
VRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRK
KVQEFEHVNGKYSTPDLLLEGPESKRTSEVVSSDPNTPVPASPAHTHAGPGALADKTEAQ
LGFHEEKELGEQKSRKVSDSQVPASAEAESEELPESCESKERPRKEKQEDCEKAEPSSEP
LVKDEGIQEQEKPLEKAELSSSPGKGEDKEVKPEDGKEEEKEPSDAQQNGDKEEEEEGKK
DDRNINFRFMFNIADGGFTELHTLWQNEERAAMSSGKIYDIWHRRHDYWLLAGIVTHGYA
RWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNM
TQDPSHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKAD
VTRLPSMLSRIPPVAARLQMSERSILSSMATRGGDPAAQGSFGSAPIFNNSFGPNFRGPG
PGGIVNYSQMPLGPYVTGVGVSGGQWCHCPGRLCSPASP
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatgatggggtgctggaaggattggatgagttttttgcagaagaccaagtt
gtggtacagaaaaagaagaaatccaagaagctgaaagatggcaaagctgccaaaatcaag
aggaggaagaaggaggggagcaatgatgaaatgtcagaaaatgaagaggagatggaggag
aaatcggaaagtgaagggagcgactattctcccaacaaaaagaagaagaaaaaactgaaa
gacaagaaggagaaaaagccaaaacggaagaagaaggatgaagaggaggatgacaatgag
gatggaagtttaaaggagcccaagagctcagcccagctcatggaggaatggggtctcgat
gatgtagattacgttttctcagaagaggattaccatactctgacgaattacaaggctttc
agccagttcctcaggcccctgattgccaagaagaaccccaagatccccatgtccaagatg
atgacggtgctgggtgccaagtggcgagagttcagtgccaacaaccccttcaagggcagc
tcggcggcggcggccgcggccgctgtgnnnnnnnnnnnnnnnnnnaccatctccccctcc
ctccccgccagcccccagccctctgccctgcccaccgtcatcaggaaggccaagaccaag
gagggaaagggtccaggtgtacggaagaaaatcaagggctccaaagacgggaagaaaaag
gggaaagggaaaaagatggcgggcttgaaatttcggcttggaggaatctccagcaaaagg
aaaaagggctcctctagcgaagaggaggaacgggaagaatccgactttgacagcgccagc
atcaacagctcctccgtgcgctccgagtgctcagctggcctggggaagagagggaagaag
aggaaaaagaaaaagaggattgaagagggggacgggtacgagaccgaccaccaggactac
tgcgaggtgtgccagcagggcggggagatcatcctgtgtgacacctgcccccgcgcctac
cacctggtctgcctggaccccgagctggagaaggcccccgagggcaagtggagctgcccc
cactgtgagaaggagggcatccagtgggagccgaaggaggaggaggaggaggaagaggat
ggtggcgaggaggaggaggaggatgaccacatggagttctgccgggtgtgtaaggacgga
ggggagctgctgtgctgtgacacctgcccgtcctcctaccaccttcactgcctgaacccg
ccactgccagagatcccaaatggtgaatggctctgcccacgctgtacttgccctcccctg
aagggcaaagtgcagcgcatcctgcactgggcctggaggctggagctgtaccacaccgtc
atgtaccgcaactaccagcgcaagaacgacatggacgagccaccggccttcgactacggc
tctggggacgaggacagccagagggagaagaggaagaacaaggacccccagtacgccaag
atggaggagcggttctaccgctacggcatcaagcctgagtggatgatgatccaccgcatc
ctgaaccacagctttgataagaagggagacatccattacctgatcaagtggaaggacctg
ccctatgaccagtgcacctgggagatcgatgacatagacatcccctactatgagaacctc
aaactcctctactggaaccacagggagctgatgctgggggaggacacgcgccctctgaag
aagctgaacaagaaagggaaaaagctgaaagaggagaagctggaaaagcctccagaaaca
cctcttgtggatcctacagtgaagtttgacaagcagccgtggtacatcgatgccacggga
ggcacgctgcacccttaccagctggaagggctgaactggctgagattctcctgggcacaa
gggacagatacaatcctggctgacgagatggggctagggaagacggtgcagactattgtg
ttcttgtattccctgtacaaggagggccactcaaaggggccgtacctggtcagtgccccc
ctctccaccatcatcaactgggagcgtgagtttgagatgtgggcacctgatttctacgtg
gtgacctacacgggggacaaggagagccgctcggtcatccgggaaaatgagttttctttt
gaggacaacgccatccgcagcgggaagaaagtcttcaggatgaagaaggaagcccagatc
aagttccacgtcctgctcacgtcctatgagctgatcaccattgaccaggcagtgctgggc
tccatagagtgggcctgtctggttgtggatgaagcacacaggctgaagaacaaccagtcc
aaattctttagagtgctgaatagctacaagatcgattacaagctgctcctcacagggact
ccgctccagaacaacttggaagagctcttccacctgctcaatttcctgactccagagagg
tttaacaacctggagggtttcctggaggagtttgcagacatctccaaggaggaccagatc
aagaagctccatgacctgctgggtccccacatgctgcggcggctcaaggccgatgtgttc
aagaacatgccggccaagacggagctgatcgtgcgcgtggagctgagccagatgcagaag
aaatactacaaattcatactgacaaggaactttgaagccctgaattcgaaaggtggtggg
aaccaggtctcactgctcaacatcatgatggacctgaagaagtgctgcaatcacccatac
ctgttccctgtggcagctgtggaggcccctgtgctgcccaatggatcttatgatgggaat
tctttggtcaaatcttctgggaaactgatgctgctccaaaagatgctgaagaagttgcgg
gatggcggtcacagagttctgatcttctcgcagatgacaaagatgctggatttgctggag
gatttcctggagtacgaaggttacaagtacgagcgcattgacgggggcatcaccggcggc
ctgcgccaggaggccatcgacaggttcaatgctcctggggctcagcagttctgcttcctc
ctctccacccgcgccggtggtctgggcataaaccttgctacggccgacactgtcattatt
tatgattctgactggaatccccacaatgacatccaggccttcagcagagctcaccgcatc
gggcagaacaagaaggtgatgatttaccgcttcgtgaccagggcctccgtggaggagcgc
atcacccaggtggccaagaggaagatgatgctcacacacctggtggtgcgcccggggctc
ggctccaagtcaggctccatgaccaaacaagagctggatgacatcctcaagttcgggaca
gaagaactcttcaaggatgatgtggaaggcatggtgtctcagggacagcggattgcaatg
ccagatgctgttacccctttctcagacacactgtcagcaaaagggggtgcagcaacccct
ggcctgaaaaaaaagcatggcagcaccccaccaggtgacaataaggatgtagatgacagc
agtgtgatccactatgatgatgctgccatctcgaagcttttggaccgaaaccaggatgcg
actgacgacacggagctgcagaacatgaatgagtatctcagctcctttaaagtggctcag
tatgttgtgagagaagaggatggtgtggaggaggtggaacgggagatcatcaagcaagag
gagaatgtggaccctgactactgggagaagctgctgcggcaccattatgagcagcagcag
gaggatctggccaggaacctggggaaagggaagagaatccgcaagcaggtcaactacaat
gacacctctcaggaggaccaagagtggcaggatgagctctctgacaaccagtcagagtat
tccattggctctgaggacgaggatgaagactttgaagagaggccagaaggccagagtggc
agaagacaatcacggagacagctgaagtctgacagagacaaacctctccctcctttgctg
gcaagagttggggggaacatcgaggttctgggtttcaacgcccggcagcgcaaggcgttc
ctgaacgccatcatgcgctggggaatgcccccccaggacgccttcaactcccactggctg
gtccgggatctgcgagggaagagcgagaaggagttcagggcatatgtgtccctgttcatg
agacacttgtgtgagcctggggccgatggtgccgagacctttgcggacggcgttccccgg
gaagggctgtctcgccagcacgtgctcacccgcatcggggtcatgtcactagtaaggaag
aaggtccaggagttcgagcatgtcaatgggaagtacagcaccccagacctgcttcttgag
ggcccagagagcaagagaaccagtgaggttgtgtcttcagatcccaacacgcctgtcccg
gccagtccagcacacacacacgcgggaccaggggcccttgcagacaaaacagaagcacag
ctggggttccatgaggaaaaggagctgggggaacagaagagcagaaaggtgtctgacagc
caggtacctgcaagtgctgaggcggagagtgaagagctcccggaaagctgtgagagcaag
gagaggccaaggaaggagaagcaagaggattgtgaaaaggctgagccttcttctgagccc
ctggtgaaagacgaggggattcaagagcaggagaagcctttggagaaggcagagttgagc
agcagcccagggaagggggaggataaagaagtcaaaccagaggatggcaaggaggaggag
aaggaaccaagtgatgcccagcaaaatggtgacaaagaagaagaggaggagggaaagaag
gatgacagaaacataaatttcagattcatgttcaacattgctgacggtggcttcacagag
ctgcacacgctgtggcagaatgaggagagggctgccatgtcctctggcaagatctacgac
atctggcaccgccgacacgactactggctgttggcaggaattgtcactcatggctatgcc
cgctggcaggacatccagaacgacccacgctacgtgatcctgaacgagcccttcaagtca
gagatacacaagggcaactaccttgagatgaagaacaagttccttgcccggcgttttaag
ttgctggagcaggccctggtgatcgaggagcagctgcggagggcggcgtacctcaacatg
acccaagaccccagtcacccggccatggcactgaacgcgcggctggcagaagtggagtgc
cttgctgagagccaccagcacctctccaaagagtccctggctgggaacaagcctgccaac
gctgtcctgcacaaggtgctgaaccagcttgaggagctgctgagtgacatgaaggctgat
gtgacacgcttgccctccatgctgtcccgcatcccgcccgtggctgcccggctgcagatg
tcagagcggagcatcctcagcagcatggccacccgtggaggggatccagctgcccagggc
tcctttggctctgccccgatcttcaacaacagctttgggccaaatttccgcggtccgggg
ccaggtgggattgtcaactacagccagatgcctctgggaccctatgtgactggtgtaggg
gtgagtggaggccagtggtgccattgtcccggccggctgtgctccccggcttccccctaa
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integrated database retrieval system
