Geospiza fortis (medium ground-finch): 102034533
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Entry
102034533 CDS
T03755
Symbol
PRDM16
Name
(RefSeq) PR/SET domain 16
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr00310
Lysine degradation
gfr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
102034533 (PRDM16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gfr03000
]
102034533 (PRDM16)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102034533 (PRDM16)
Enzymes [BR:
gfr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
102034533 (PRDM16)
Transcription factors [BR:
gfr03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
102034533 (PRDM16)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
102034533 (PRDM16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_jaz
zf-C2H2_6
SET
zf-C2H2_11
zf-met
zf-H2C2_5
Zap1_zf1
zf-BED
zf-C2H2_15
C2CH-4th_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
102034533
NCBI-ProteinID:
XP_014165224
LinkDB
All DBs
Position
Un
AA seq
1392 aa
AA seq
DB search
MENIPPLANPFGVQPLPAAAEGSRALQRSHTWAPGLILSFKFVISEPFQAAKVSEGRCAP
AGSVRVFTDVSLVGAMRIRGGWDPPRSLQPCPYPEPGHGGAEGGSERPRCARPDSLPSVT
GMSPKLSRAAAAGAEPSAGDSEIVNNMYETDPDLLAGESAEEETEDSIMSPIPVGPPSPF
PTSEDFTPKEGSPYEAPVYIPDDIPIPPDFELRESSIPGAGLGIWAKKKIEVGERFGPYM
AVQRSTLKETNFGWEQILTDPEVTSQEGNIKKQIPDALGTEKFCGDSSQGGAGNWLKYIR
VCCSCDEQNLAVCHINEQVYYKVIKEIEPGEELLVCLKEGGYSLGNMAPSMEEEPSFRCE
DCDELFQSKLDLRRHKKYGCGAVGALYESLSDDIKQEGLGDGQVYECKDCERMFPNKYSL
EQHMVIHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKRFECENCVKVFTDPSNLQRHI
RSQHVGARAHACPDCGKTFATSSGLKQHKHIHSTVKPFICEVCHKSYTQFSNLCRHKRMH
ADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHYSPAGIFAPGLPLTPTSIMDKSKPSP
NLNHASLGFNEYFPSRPHPGGLPFSPAPPAFPALTPGFPGIFPPSLYPRPPLLPPTQLLK
SPLNHTPDAKLPSPLGNPALPLISAVSNSNQAPSGEEKCESSLENSYLEKLKARNSDMSD
GSDFEDVNTTTGTDLDTTTGTGSDLDSDAESDRDKTKDKSKQMETKPDFVSSSVSASSTN
TTSEIPLFYSQHSFFPPPEEHLLPTTGAANDSIKAIASIAEKYFGPGFMGMQEKKMGSLP
YHSMFPFQFLPNFPHSLYPFTERSLNHNLLVKAEPKSPRDLHKVGGTSSESPFDLTTKPK
EIKPILPPPKVLPAPSSGEEQPLDLSIGNRIRASQNGGREPRKNHIYGERKLMASEVLPK
ISQSQLPQQPSLHYAKPSPFFMDPIYRVEKRKVTDPVGALKEKYLRPSPLLFHPQMSAIE
TMTEKLESFAAMKADSGSSLQPLPHHPFNFRSPPPTLSDPILRKGKERYTCRYCGKIFPR
SANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTN
LDRHLKKHEHENVPVSQHSGVITNHLGTSASSPNSESDNHALLDEKEDSYFSEIRNFIAN
SEMNQASALADKRPEIQDIDGNSQCHGLANEKAEDVDDEDEELEEEDDDSLTGKSQDETA
SPTAEPRGAFEDEEDEEPTSLTMSFDHTRRCVEEDEAGLLDLEQMPNFGKGLDLRKAAEE
AFEVKDVFNSTLDSEAIKQTLYRQAKNQAYAMMLSLSENAPLHTSSQSSLGAWLDMAGAA
SESGTFNPINHL
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggagaacatccccccccttgcaaaccccttcggggttcagcctctccccgcggctgcc
gaggggtcacgggcgctccagcgctcccacacgtgggctccgggcttgattttgtcattc
aagttcgtcatttcggagcctttccaggccgccaaggtcagcgagggccgatgtgccccg
gcgggttcagtgcgggtttttacagatgtgtccctggtgggcgcgatgcggatccggggc
ggctgggaccctccacgctccctccagccctgtccctacccagagcccgggcacggggga
gcggagggaggcagcgagcggccccgctgtgcccggcccgattccctgccctcggtgacc
gggatgtccccaaagctctcccgagcggcggccgcgggtgcggagcccagcgcaggtgac
agcgagattgtaaataatatgtacgagaccgaccccgatctccttgctggagaaagcgca
gaggaggaaactgaggacagtataatgtcccccatccctgtgggacctccgtcacccttc
cccaccagtgaggacttcactcccaaggagggctcaccctatgaagctcccgtctacatt
cctgatgacattccaatcccaccagattttgaactcagagaatcttcgatcccaggggca
gggctagggatttgggccaaaaagaagattgaagttggggagagatttggaccctatatg
gcagtacagaggagcacattaaaggaaacaaactttggatgggagcaaatactgactgat
cccgaggtgacctcccaggagggcaatataaaaaagcagattcccgatgccctgggcact
gagaagttctgtggtgactccagccagggcggagctgggaactggctgaagtacatccga
gtgtgctgctcctgcgacgagcagaacctggctgtgtgccacatcaacgagcaggtctat
tataaagttattaaagagatcgagccgggggaagagctcctggtgtgtctgaaggaagga
ggttattccctggggaacatggcacccagcatggaagaggagccctcgttccgctgcgag
gactgtgatgagctgttccagtccaagctggacctgcggcgccacaagaagtacggctgt
ggggccgtgggggccctctacgagagcctcagcgacgacatcaagcaggaaggccttgga
gatggacaggtctacgagtgcaaggactgtgagaggatgttccccaataaatacagcctg
gagcagcacatggtgatccacaccgaggagagggagtacaagtgtgaccagtgtcccaag
gctttcaactggaaatccaacctgattcgtcaccaaatgtctcacgacagtgggaaacgg
tttgaatgtgaaaactgtgtaaaggtgtttacggaccccagcaacctccagcggcacatc
cgctcgcagcacgtgggcgcgcgggcccacgcctgccccgactgcggcaagaccttcgcc
acctcctcgggcctcaagcagcacaagcacatccacagcactgtcaaacctttcatatgt
gaggtctgtcacaaatcctacacgcagttctccaacctgtgccgccacaagcggatgcac
gcggactgccgcacccagatcaagtgcaaggactgcgggcagatgttcagcactacctcc
tccctcaacaagcaccggcgcttctgcgagggcaagaaccattacagccccgccggcatc
ttcgcccccggcctccccctcacgcccacctccatcatggacaaatccaagccctctccc
aacctcaaccacgccagcctgggctttaatgagtatttcccatcccgcccgcaccccggc
gggctcccgttctcgccagcacctccagcattccctgccctcaccccgggattcccgggg
atttttccaccttctctgtaccccaggccccccttgttaccgcccacacagctgctcaaa
agtcccctcaaccacactccggatgccaagctccccagccccctcgggaacccggcgttg
cccctgatctccgcagtgagcaacagcaaccaggctccttcaggggaggagaaatgtgaa
agcagcctggaaaactcctacctggagaagctaaaagccaggaacagtgacatgtccgat
ggcagtgactttgaggacgtcaatacaaccacgggcacggatctggacaccacgaccggc
acgggctctgacctggacagtgacgcggagagtgacagggacaaaacaaaagacaagagc
aaacaaatggagaccaagccagattttgtcagcagctcggtgtctgccagctccaccaac
accacgagcgagatccctctcttctattctcagcattccttctttcctccccccgaggag
cacctgctgcccaccacaggcgctgccaatgactccattaaagctattgcctccatcgca
gagaagtattttgggcctggctttatgggcatgcaggagaaaaagatgggttcgctcccg
tatcattccatgttccccttccagttcctccccaatttcccccactccctctaccctttc
acggagcggagcctcaatcacaacttgctggtcaaggcagaaccaaagtcacccagggac
ctccacaaagtcggtggcaccagctcagagtcccccttcgatctcaccacgaagccaaaa
gagattaagccaatcctgccgccccccaaggtcctcccagccccgtcctcaggggaggag
cagccactggatctgagcattggcaaccgcatccgagccagccagaacggagggagagag
ccacggaaaaaccacatttatggggagaggaagctgatggcaagtgaggtcttacctaag
atttcccagtcccagctgcctcagcagccttccctgcactacgctaagccatcgcccttt
ttcatggaccccatctacagggtggagaagcggaaggtgacagaccccgtgggtgccctc
aaggagaagtacctgcgaccctccccgctgctttttcacccccagatgtcggccatcgag
acgatgacagagaaactggagagctttgcagccatgaaggccgactctggctcatccctg
cagccccttccccatcaccccttcaacttccgatcgccgccgcccacgctctccgacccc
atcctgcgcaagggcaaggagcgctacacctgcaggtactgtggcaagatcttcccacgc
tcagccaacctgacgaggcacctgcggacacacactggggagcagccttacaggtgtaaa
tactgtgacaggtcattcagcatttcctccaacctgcagaggcacgtcaggaacatccac
aacaaggagaagccattcaagtgccacctgtgcaacaggtgcttcgggcagcagaccaac
ctcgacaggcacctgaagaagcacgagcacgaaaatgttccagtgagccagcactccgga
gtcatcaccaaccaccttgggaccagcgcctcctcccccaactcggaatcagacaaccat
gcacttttagatgaaaaagaggattcctatttctcagaaatcagaaattttattgccaac
agcgagatgaatcaagcgtcggctttagcagataaaaggccagaaatccaggatattgat
ggcaattcccagtgccacggactggcaaacgagaaggcagaagatgtggacgatgaggat
gaagaactggaagaggaagatgatgacagcctgactgggaagtcccaggacgagacggcg
tcgcccacggcggagccccggggagcgttcgaggatgaggaggatgaggagcccacgtct
ctcaccatgagctttgaccacacccgaaggtgtgttgaggaggacgaagccggcctgtta
gatttggagcagatgccgaattttgggaaggggctggatctccgcaaagcggccgaggaa
gcctttgaagttaaagatgtgtttaattccaccttagactctgaggcaataaaacagact
ctgtacaggcaggctaaaaaccaggcttatgcaatgatgctgtccctgtctgagaacgct
cccctccacacgtcctcccagagctctctgggggcttggctggacatggcaggagcagct
tcagagtcggggacctttaaccccatcaaccacctctga
DBGET
integrated database retrieval system
