Geospiza fortis (medium ground-finch): 102034561 Help Entry 102034561         CDS       T03755                                  Symbol COL4A1 Name (RefSeq) collagen type IV alpha 1 chain   KO K06237   collagen type IV alpha Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04510   Focal adhesion gfr04512   ECM-receptor interaction gfr04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gfr00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102034561 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102034561 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102034561 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:gfr04147]     102034561 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:gfr00536]     102034561 (COL4A1) Exosome [BR:gfr04147]  Exosomal proteins   Exosomal proteins of other cancer cells    102034561 (COL4A1) Glycosaminoglycan binding proteins [BR:gfr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102034561 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  102034561 NCBI-ProteinID:  XP_005420018 LinkDB All DBs Position Un AA seq 1615 aa AA seqDB search MQGPEGPPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPG CNGTKGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVVGLLAPGVLKGEKGFPGQPGLP GPPGASGFQGPMGPMGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPG PAPHMKEKGSEIIKGEKGDPGEKGEQGIPGLPGSGFKGDKGEPGQPGPRGKPGKDGEPGL KGEPGLPGGFGIPGRPGEPGTKGDKGERGYPGPPGRMIDAGPIDTFGEKGDPGVSGLPGL KGQKGEKGFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPG PPGLPGPPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGEKGEACALCDKVG PPGLPGPQGPPGPAGFPGQAGFKGDRGLPGLSGLPGVPGPPGTPGLTGSPGPKGEPGDFT YDSILKGEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGVAGAAGLKGERGPPGQPGFP GVRGERGFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLP GPPGFPGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPG TPGLDGLPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGI PGQQGFRGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGIKGERGFPGVP GLDMPGPKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPG PIGERGFPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQG EKGDHGEAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVG EMGLPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGS PGLSGDKGEKGNIGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGE PGEPGLPGPAGATGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFP GSPGSPGIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIQGPKGDRGPQGQPGLPGLQGPIG PPGPPGLKGAKGEQGSSGWPGTPGGPGMKGDPGFQGLPGSPGLPGGVGPKGDLGPPGVPG VPGPKGTPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFP GLPGPKGQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAM GPPGAPSVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCL RKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAP AMVIAVHSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFI ECHGRGTCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRKT NT seq 4848 nt NT seq  +upstreamnt  +downstreamnt atgcaaggacctgaaggtcctcctgggccaccagggcttaagggtgatactggagaacca ggactgccaggaacaaagggaacaagaggccccccgggagtatcaggcttcccaggaaac ccaggccttcctggcattcctggacaagatggccctcctggtccacctggcattccagga tgcaatggcacaaagggtgaaagaggtccagtaggtcccccaggtttaccaggactgact ggaagtataggacctccaggacctcctggaatgaagggagatccaggtgaagtggttggt cttttagctcctggtgtgctaaaaggtgaaaaagggtttcctggccagcctggactgcct ggtccacctggagcttcagggtttcagggaccaatgggaccaatgggccctccaggagag ccaggtcccccagggccaccaggacttccaggcgagaagggctacatgggcttgggcttt cagggtcccaaaggtgaaaagggagaacaaggggtaaggggccccccaggacccccagga ccagcacctcatatgaaagaaaaagggagtgaaatcataaagggagaaaagggtgatcca ggtgaaaagggtgaacagggaatcccaggattgccaggttcaggtttcaaaggagacaag ggtgaacccgggcagcctggtccacgtggcaagcctggaaaagatggtgaaccaggactg aaaggagaacctggtttgcctggaggatttgggattccaggacggcctggagagcctggc acaaagggtgataaaggggagagaggttatccaggacctccaggaagaatgatagatgct ggaccaatagatacctttggtgaaaaaggagaccctggagtttcaggtttgcctggactg aaaggtcaaaaaggtgaaaaaggcttccctggtgcacaaggaatcccaggacctccaggt cgaccagttccagacagggtaggatcacctggtgtccctggagagagaggtgaaaaaggt gaaaagggttctcctggattcccttcacctggaatccctggaagagatggtttcccaggt ccccctgggttgcctggcccaccaggacctccaggcaaaacagatggaattgatcagtgc cagcagggagaacctggtgcaccaggtagtcctggacttccagggagagatggatttcca ggagagatgggagagaaaggtgaaaaaggtgaagcctgtgccttgtgtgataaagtagga cctcctggacttccaggaccacaagggccaccgggtccagcaggttttccaggacaagca ggtttcaagggtgacagaggcttacctgggcttagtggccttccaggggtgcctggtccc cctggcactccaggacttacgggcagccctgggccgaaaggagaacctggagattttact tatgattctatcctgaaaggtgaaaagggagatcctggtttcccaggacagccaggcatt cccggaagagaaggaagaccaggaaaagatggatttccaggtccccagggtccaaaagga gtagcgggtgcggctggtttgaaaggagaacgtggtccccctggccaacctggattccct ggagtgcgtggtgagagaggtttccctggccctcctgggataggtgctgcaggattacct ggtgaaaaaggagacagaggctttgctggaaccccgggtttaccaggacttccaggagca aagggtgaagcaggacgaactatatcgctccctggacctcctggggcagatggccttcct gggccacctggtttccctggaccccaaggtgacaaagggaatcctgggcttccaggcaga cctggcctaccaggagaaaaaggtgctgttgggcagccagggatagggttccctggacct ccaggtcccaaaggtttccaaggtcagcccggctcacctggtctgccaggaactccagga acccctggtctggatggtttgccaggagttccaggtttacaaggccaaaagggcgaacct ggtgtaggtctacctggccctaagggattgccaggcccccctggcccagctggcatccct ggagagaagggaagtccaggactgcctggtttacgtggcgagcagggctttccaggcata cctggacagcagggattcagaggtgaccctggtctcccaggtctccaaggcttacagggc cctccaggtgccccggggctgggccctccaggattgccaggacctgctgggcagccggga ccccagggaccaccaggatttcctggaataaaaggagaaaggggcttccctggtgtccca ggtctagatatgccaggacctaaaggggataaaggcagcccgggccagccaggagtccca ggctctgtggggttacctggtctgccaggtccacagggggctgttggactgaaaggatca acaggacccaaaggagaaatgggagttatgggaactcctgggttgccaggaactcctggg cccattggagagcgagggtttcctggtgaaaaaggtagccaaggtttcaaaggtgtaatt ggaccacagggtgatcctggtgtgaagggagataaaggtgaagctggtctcccaggaaaa cctggaacaatagacaacatggacatggttagcctcaaaggccagaagggagatcaagga gaaaaaggggaccatggagaagcaggagaaaaagggctacgtggggattatggagagcca ggaattccagggagagatggtgaacctggtactccaggacagccaggaccaaaaggtgat caaggccccccagggtacccaggggatccaggagttccaggacaaaaaggatcggttggt gaaatgggtctgccaggaacacctggagaaaagggtcttcctggagtaccaggttcacca ggcacaccagggttccctgggcaaaaaggcgaaaaaggagacaaaggagcaccgggtttt cctggaattggctttccaggggctcctggtgagaagggagaaccaggaagaacgggtagt ccaggtctgtctggagataaaggtgaaaagggtaatataggaattcctggaatgccaggt gccccaggtcccaaaggatcccctggcatggcaggatttccaggcaaccctggccgccat ggagaaaagggtgaaaaaggacttcctggcttaagtgggattccaggtttaaaaggagaa ccaggtgaacctggtcttccgggtcctgctggtgccactggtcagaagggtgaaccaggt tatgatgggattccaggtgcagctggtgcaaagggtgaacaaggtcttccaggtagagga cttccaggatttcctggtgcaaagggagataaaggtgcaaaaggcgaagtgggttttcca ggatccccaggaagtccagggatcccaggcctgaaaggagaaccaggatatgcaggtcca ccaggccctaaagggaaccaaggtcttcctgggctaccaggaagtgcaattcaaggccct aaaggagacagaggaccccaaggccaacctggtcttccaggtttacaaggtccaataggg ccaccaggacctccaggtctgaaaggggccaaaggagagcaagggagcagtggctggcca gggactcctgggggtccaggaatgaaaggtgatccaggtttccaaggactgccaggtagt cctggtttgccaggaggtgttggtccaaagggtgatctcggacctccaggagttccaggt gttccaggtccaaaagggactcctggcttcccaggccttaagggtgagcgaggtgaccaa ggtcttcctggatctaaaggtttacaaggtccaccaggcccaccaggtccttttcagctt attaaaggggatcctggcttacctggacctgtaggaccagttggtctcaagggattccca ggacttccaggtcccaaaggacagcaaggggtgacaggaccttcaggtgtacctggacca cctggtagtccagggtttgatggtcagcctgggcagaaaggggaagctggtccttttggt cccccagggcccagaggatttcctggtccccctggccctgatggcttgcctggggctatg ggcccaccaggggcaccatctgttgctcatggattccttgttaccagacacagtcaaacc attgaagagccatcgtgtccgtttggaacaaggctgatttaccacggctactccttgctt tatgtacaaggcaatgaaagagcacatggccaagatctgggcacagcaggaagctgtctt cggaaattcagtaccatgcctttcttattctgcaatatcaacaacgtctgtaattttgca tcaaggaatgactactcctactggctgtctactcctgagcccatgccaatgaatatggct cctatcactggtgataatatcagaccattcatcagcagatgctctgtgtgtgaagctcct gctatggtaatagctgttcacagccaaacaattcaaataccaccgtgtcctgaaggctgg agttcactttggattggttactcctttgtcatgcacaccagtgctggtgctgagggctct ggccaggccctggcatcccctggctcctgcctagaggagttccgcagcgctcccttcatt gaatgccatggccggggcacctgcaattactatgcaaatgcttacagcttctggcttgcc actatagaacggaatgagatgttcaggaaaccgactccctcaaccttgaaagccggggat ctacgctcaaatgttagccgttgtcaagtctgtatgagaaaaacataa

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