KEGG   Geospiza fortis (medium ground-finch): 102034561
Entry
102034561         CDS       T03755                                 
Symbol
COL4A1
Name
(RefSeq) collagen type IV alpha 1 chain
  KO
K06237  collagen type IV alpha
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr04382  Cornified envelope formation
gfr04510  Focal adhesion
gfr04512  ECM-receptor interaction
gfr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102034561 (COL4A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102034561 (COL4A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102034561 (COL4A1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    102034561 (COL4A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:gfr04147]
    102034561 (COL4A1)
   00536 Glycosaminoglycan binding proteins [BR:gfr00536]
    102034561 (COL4A1)
Exosome [BR:gfr04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102034561 (COL4A1)
Glycosaminoglycan binding proteins [BR:gfr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102034561 (COL4A1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102034561
NCBI-ProteinID: XP_005420018
LinkDB
Position
Un
AA seq 1615 aa
MQGPEGPPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPG
CNGTKGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVVGLLAPGVLKGEKGFPGQPGLP
GPPGASGFQGPMGPMGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPG
PAPHMKEKGSEIIKGEKGDPGEKGEQGIPGLPGSGFKGDKGEPGQPGPRGKPGKDGEPGL
KGEPGLPGGFGIPGRPGEPGTKGDKGERGYPGPPGRMIDAGPIDTFGEKGDPGVSGLPGL
KGQKGEKGFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPG
PPGLPGPPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGEKGEACALCDKVG
PPGLPGPQGPPGPAGFPGQAGFKGDRGLPGLSGLPGVPGPPGTPGLTGSPGPKGEPGDFT
YDSILKGEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGVAGAAGLKGERGPPGQPGFP
GVRGERGFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLP
GPPGFPGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPG
TPGLDGLPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGI
PGQQGFRGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGIKGERGFPGVP
GLDMPGPKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPG
PIGERGFPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQG
EKGDHGEAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVG
EMGLPGTPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGS
PGLSGDKGEKGNIGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGE
PGEPGLPGPAGATGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFP
GSPGSPGIPGLKGEPGYAGPPGPKGNQGLPGLPGSAIQGPKGDRGPQGQPGLPGLQGPIG
PPGPPGLKGAKGEQGSSGWPGTPGGPGMKGDPGFQGLPGSPGLPGGVGPKGDLGPPGVPG
VPGPKGTPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFP
GLPGPKGQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAM
GPPGAPSVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCL
RKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAP
AMVIAVHSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFI
ECHGRGTCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq 4848 nt   +upstreamnt  +downstreamnt
atgcaaggacctgaaggtcctcctgggccaccagggcttaagggtgatactggagaacca
ggactgccaggaacaaagggaacaagaggccccccgggagtatcaggcttcccaggaaac
ccaggccttcctggcattcctggacaagatggccctcctggtccacctggcattccagga
tgcaatggcacaaagggtgaaagaggtccagtaggtcccccaggtttaccaggactgact
ggaagtataggacctccaggacctcctggaatgaagggagatccaggtgaagtggttggt
cttttagctcctggtgtgctaaaaggtgaaaaagggtttcctggccagcctggactgcct
ggtccacctggagcttcagggtttcagggaccaatgggaccaatgggccctccaggagag
ccaggtcccccagggccaccaggacttccaggcgagaagggctacatgggcttgggcttt
cagggtcccaaaggtgaaaagggagaacaaggggtaaggggccccccaggacccccagga
ccagcacctcatatgaaagaaaaagggagtgaaatcataaagggagaaaagggtgatcca
ggtgaaaagggtgaacagggaatcccaggattgccaggttcaggtttcaaaggagacaag
ggtgaacccgggcagcctggtccacgtggcaagcctggaaaagatggtgaaccaggactg
aaaggagaacctggtttgcctggaggatttgggattccaggacggcctggagagcctggc
acaaagggtgataaaggggagagaggttatccaggacctccaggaagaatgatagatgct
ggaccaatagatacctttggtgaaaaaggagaccctggagtttcaggtttgcctggactg
aaaggtcaaaaaggtgaaaaaggcttccctggtgcacaaggaatcccaggacctccaggt
cgaccagttccagacagggtaggatcacctggtgtccctggagagagaggtgaaaaaggt
gaaaagggttctcctggattcccttcacctggaatccctggaagagatggtttcccaggt
ccccctgggttgcctggcccaccaggacctccaggcaaaacagatggaattgatcagtgc
cagcagggagaacctggtgcaccaggtagtcctggacttccagggagagatggatttcca
ggagagatgggagagaaaggtgaaaaaggtgaagcctgtgccttgtgtgataaagtagga
cctcctggacttccaggaccacaagggccaccgggtccagcaggttttccaggacaagca
ggtttcaagggtgacagaggcttacctgggcttagtggccttccaggggtgcctggtccc
cctggcactccaggacttacgggcagccctgggccgaaaggagaacctggagattttact
tatgattctatcctgaaaggtgaaaagggagatcctggtttcccaggacagccaggcatt
cccggaagagaaggaagaccaggaaaagatggatttccaggtccccagggtccaaaagga
gtagcgggtgcggctggtttgaaaggagaacgtggtccccctggccaacctggattccct
ggagtgcgtggtgagagaggtttccctggccctcctgggataggtgctgcaggattacct
ggtgaaaaaggagacagaggctttgctggaaccccgggtttaccaggacttccaggagca
aagggtgaagcaggacgaactatatcgctccctggacctcctggggcagatggccttcct
gggccacctggtttccctggaccccaaggtgacaaagggaatcctgggcttccaggcaga
cctggcctaccaggagaaaaaggtgctgttgggcagccagggatagggttccctggacct
ccaggtcccaaaggtttccaaggtcagcccggctcacctggtctgccaggaactccagga
acccctggtctggatggtttgccaggagttccaggtttacaaggccaaaagggcgaacct
ggtgtaggtctacctggccctaagggattgccaggcccccctggcccagctggcatccct
ggagagaagggaagtccaggactgcctggtttacgtggcgagcagggctttccaggcata
cctggacagcagggattcagaggtgaccctggtctcccaggtctccaaggcttacagggc
cctccaggtgccccggggctgggccctccaggattgccaggacctgctgggcagccggga
ccccagggaccaccaggatttcctggaataaaaggagaaaggggcttccctggtgtccca
ggtctagatatgccaggacctaaaggggataaaggcagcccgggccagccaggagtccca
ggctctgtggggttacctggtctgccaggtccacagggggctgttggactgaaaggatca
acaggacccaaaggagaaatgggagttatgggaactcctgggttgccaggaactcctggg
cccattggagagcgagggtttcctggtgaaaaaggtagccaaggtttcaaaggtgtaatt
ggaccacagggtgatcctggtgtgaagggagataaaggtgaagctggtctcccaggaaaa
cctggaacaatagacaacatggacatggttagcctcaaaggccagaagggagatcaagga
gaaaaaggggaccatggagaagcaggagaaaaagggctacgtggggattatggagagcca
ggaattccagggagagatggtgaacctggtactccaggacagccaggaccaaaaggtgat
caaggccccccagggtacccaggggatccaggagttccaggacaaaaaggatcggttggt
gaaatgggtctgccaggaacacctggagaaaagggtcttcctggagtaccaggttcacca
ggcacaccagggttccctgggcaaaaaggcgaaaaaggagacaaaggagcaccgggtttt
cctggaattggctttccaggggctcctggtgagaagggagaaccaggaagaacgggtagt
ccaggtctgtctggagataaaggtgaaaagggtaatataggaattcctggaatgccaggt
gccccaggtcccaaaggatcccctggcatggcaggatttccaggcaaccctggccgccat
ggagaaaagggtgaaaaaggacttcctggcttaagtgggattccaggtttaaaaggagaa
ccaggtgaacctggtcttccgggtcctgctggtgccactggtcagaagggtgaaccaggt
tatgatgggattccaggtgcagctggtgcaaagggtgaacaaggtcttccaggtagagga
cttccaggatttcctggtgcaaagggagataaaggtgcaaaaggcgaagtgggttttcca
ggatccccaggaagtccagggatcccaggcctgaaaggagaaccaggatatgcaggtcca
ccaggccctaaagggaaccaaggtcttcctgggctaccaggaagtgcaattcaaggccct
aaaggagacagaggaccccaaggccaacctggtcttccaggtttacaaggtccaataggg
ccaccaggacctccaggtctgaaaggggccaaaggagagcaagggagcagtggctggcca
gggactcctgggggtccaggaatgaaaggtgatccaggtttccaaggactgccaggtagt
cctggtttgccaggaggtgttggtccaaagggtgatctcggacctccaggagttccaggt
gttccaggtccaaaagggactcctggcttcccaggccttaagggtgagcgaggtgaccaa
ggtcttcctggatctaaaggtttacaaggtccaccaggcccaccaggtccttttcagctt
attaaaggggatcctggcttacctggacctgtaggaccagttggtctcaagggattccca
ggacttccaggtcccaaaggacagcaaggggtgacaggaccttcaggtgtacctggacca
cctggtagtccagggtttgatggtcagcctgggcagaaaggggaagctggtccttttggt
cccccagggcccagaggatttcctggtccccctggccctgatggcttgcctggggctatg
ggcccaccaggggcaccatctgttgctcatggattccttgttaccagacacagtcaaacc
attgaagagccatcgtgtccgtttggaacaaggctgatttaccacggctactccttgctt
tatgtacaaggcaatgaaagagcacatggccaagatctgggcacagcaggaagctgtctt
cggaaattcagtaccatgcctttcttattctgcaatatcaacaacgtctgtaattttgca
tcaaggaatgactactcctactggctgtctactcctgagcccatgccaatgaatatggct
cctatcactggtgataatatcagaccattcatcagcagatgctctgtgtgtgaagctcct
gctatggtaatagctgttcacagccaaacaattcaaataccaccgtgtcctgaaggctgg
agttcactttggattggttactcctttgtcatgcacaccagtgctggtgctgagggctct
ggccaggccctggcatcccctggctcctgcctagaggagttccgcagcgctcccttcatt
gaatgccatggccggggcacctgcaattactatgcaaatgcttacagcttctggcttgcc
actatagaacggaatgagatgttcaggaaaccgactccctcaaccttgaaagccggggat
ctacgctcaaatgttagccgttgtcaagtctgtatgagaaaaacataa

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