Geospiza fortis (medium ground-finch): 102034618
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Entry
102034618 CDS
T03755
Symbol
PMS2
Name
(RefSeq) PMS1 homolog 2, mismatch repair system component
KO
K10858
DNA mismatch repair protein PMS2
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03430
Mismatch repair
gfr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102034618 (PMS2)
03460 Fanconi anemia pathway
102034618 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102034618 (PMS2)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
102034618 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
UPF0242
DUF5741
Motif
Other DBs
NCBI-GeneID:
102034618
NCBI-ProteinID:
XP_005420529
UniProt:
A0A6I9HHN3
LinkDB
All DBs
Position
Un
AA seq
866 aa
AA seq
DB search
PSPQPAGAIRPIDRRSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDHGAELI
EVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTIFTCH
KSAKVGTRLVFDHNGRITQRTPFPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEYAKMVQ
LLQAYCIVSKGVRINCTNQIGQGKKSCVISTAGSPSLKENIGAVFGQKQLQSLIPFVQLP
PSEAVCEEYGLNPADMPQNLYSIGGFISRCDHGVGRSTTDRQFFFINQRPCDPAKVVKIV
NEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKTSLMEMFGSD
VNKLDVNQKLLDLAGNLKKTLPEKAEKPQADMLSDSETESPGGEGKRTMTLARLRESFSL
HQATESDFQSSKKVKQQHSSPRQRLLDTTGGTVKIQKAVLTKKAESCHKLDSKVSIPRRH
LRKLEDASDSGFCSISESDAGCSTPEAGSCINSESAINSEEEFCSTEEQMQKECLKTAGC
SKKSLDCDVQVLGTEPELDQVNDWADQNKFSQEGNSCSPRVKRFKSRKFKTEADDSKASK
YPEEKNTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQQQKNTETENYRRFKAKISPGD
NKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEMLQQHT
VLQGQKLIVPQNLNLTAVNETVLIENLEVFRKNGFDFVINENAPVTQRVKLVSLPTSKNW
TFGPQDIDELIFMLSDYPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMRKLITHMGE
IEHPWNCPHGRPTMRHIVSLDLISPQ
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
cccagcccgcagcccgccggggccatccggcccatcgaccgccggtctgtccatcgcatc
tgctcggggcaggtcgtgctgaacctcggcactgccgtgaaagagctggtggagaacagc
ctggatgccggagctaccaacatcgatataaaacttaaagatcatggggcagagctgata
gaagtttcagataatggaggtggagtggaagaggaaaactttgaaggcttgactctgaaa
cattacacatcaaagatacaagatttttctgatctaatacatgttgaaacatttgggttt
cgaggtgaagctttgagttcactgtgtgcattaagtgatgttaccattttcacctgtcat
aagtcagcaaaggttgggactcgtttggtgtttgatcacaatggcagaattactcagagg
actcctttcccacggcagcagggaaccactgtcagcatccagcagttgttttatacctta
ccagtgcggcataaagagttccaaaggaacatcaaaaaggaatatgcaaaaatggtccag
ctgttgcaggcctactgtattgtttccaaaggagtgcggattaactgcactaatcaaatt
ggccaggggaaaaaaagctgtgtgatatccactgctggaagtcccagtttaaaggagaac
attggagcagtatttggacaaaaacagttgcagagccttattccttttgttcagcttcct
cctagtgaagctgtttgtgaagaatatggactcaaccctgctgacatgccacagaatctt
tatagtattggtggcttcatttcccgttgtgatcacggtgttggaaggagcacgacagac
agacagttcttctttatcaaccaacggccctgtgatccagccaaggttgtcaaaattgtg
aatgaagtttatcacttacacaataaacaccagtatccatttgttgtccttaacattggg
gtagattctgagtgtgttgacatcaatgtaactcctgacaaaaggcagattttacttcag
gaggaaaagtttttattagcaattctaaagacttctctgatggagatgtttggtagtgat
gttaacaaactggatgtcaatcagaaacttctggatcttgcaggtaacttgaagaagaca
cttcctgaaaaggcagaaaagcctcaggcagacatgctgtctgactctgagactgaaagt
ccaggtggtgaaggcaaaagaacaatgactcttgccagattaagggagtcattctctctc
catcaagcaacagaaagtgactttcaaagctctaaaaaggtaaaacagcagcacagttcc
cctagacaaaggttactcgataccactgggggtactgtaaagattcaaaaggctgtcttg
actaagaaggctgaaagttgtcataaattggactcaaaggtgtcaattccaaggagacac
ttgagaaaattagaagatgcttcagattctggattctgtagtatttctgagtcagatgct
ggatgtagcacaccagaagctggaagctgcatcaatagtgaaagtgcaattaattctgag
gaagaattctgtagcacagaagaacagatgcagaaggagtgtcttaaaactgctggatgc
agtaagaaatcattggactgtgatgttcaggtcttgggcactgaacccgagctagatcaa
gtgaatgactgggctgatcagaacaagttttctcaagaaggaaatagttgttctccaaga
gtaaaacgttttaaaagcagaaagtttaaaactgaagcagatgattctaaggcaagtaaa
tatcctgaagaaaagaacactagtgttgatgtgctggtggaagttaaaaagaaaattgtg
cctcttgaattctctatgaaggttttggcagaaaaagtaaaaaaggtaatacagcaacaa
cagaaaaatacagaaactgaaaattacagaagatttaaagcaaaaattagtcctggggac
aacaaagtagcagaagatgaattaaggaaagagatcagtaaagaaatgtttgcaaaaatg
gaaatcattggccagttcaatttagggtttataatagcaaagttgaattctgatcttttc
ataattgatcaacatgctactgatgagaaatacaactttgagatgttgcaacaacacact
gttctccaaggtcagaagctgatagtgcctcaaaatctcaatttaacagcagtaaatgaa
actgtattgattgaaaacctggaagtattcagaaaaaatggctttgattttgtcataaat
gaaaatgctcctgtaactcaaagagttaaattggtatcattgccaacaagcaaaaactgg
acttttgggccacaagacatagatgagctgattttcatgttgagtgactaccctggagtg
atgtgcaggccctccagggtcaggcagatgtttgcttctcgagcttgcaggaagtctgtg
atgattggaactgcactgaatgtgcaggaaatgagaaaactgatcacccacatgggtgag
attgagcatccctggaactgcccccatggaaggcctactatgagacacatagtcagtttg
gacttgatttcaccacaataa
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