KEGG   Geospiza fortis (medium ground-finch): 102034618
Entry
102034618         CDS       T03755                                 
Symbol
PMS2
Name
(RefSeq) PMS1 homolog 2, mismatch repair system component
  KO
K10858  DNA mismatch repair protein PMS2
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03430  Mismatch repair
gfr03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102034618 (PMS2)
   03460 Fanconi anemia pathway
    102034618 (PMS2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102034618 (PMS2)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     102034618 (PMS2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c UPF0242 DUF5741
Other DBs
NCBI-GeneID: 102034618
NCBI-ProteinID: XP_005420529
UniProt: A0A6I9HHN3
LinkDB
Position
Un
AA seq 866 aa
PSPQPAGAIRPIDRRSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDHGAELI
EVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTIFTCH
KSAKVGTRLVFDHNGRITQRTPFPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEYAKMVQ
LLQAYCIVSKGVRINCTNQIGQGKKSCVISTAGSPSLKENIGAVFGQKQLQSLIPFVQLP
PSEAVCEEYGLNPADMPQNLYSIGGFISRCDHGVGRSTTDRQFFFINQRPCDPAKVVKIV
NEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKTSLMEMFGSD
VNKLDVNQKLLDLAGNLKKTLPEKAEKPQADMLSDSETESPGGEGKRTMTLARLRESFSL
HQATESDFQSSKKVKQQHSSPRQRLLDTTGGTVKIQKAVLTKKAESCHKLDSKVSIPRRH
LRKLEDASDSGFCSISESDAGCSTPEAGSCINSESAINSEEEFCSTEEQMQKECLKTAGC
SKKSLDCDVQVLGTEPELDQVNDWADQNKFSQEGNSCSPRVKRFKSRKFKTEADDSKASK
YPEEKNTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQQQKNTETENYRRFKAKISPGD
NKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEMLQQHT
VLQGQKLIVPQNLNLTAVNETVLIENLEVFRKNGFDFVINENAPVTQRVKLVSLPTSKNW
TFGPQDIDELIFMLSDYPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMRKLITHMGE
IEHPWNCPHGRPTMRHIVSLDLISPQ
NT seq 2601 nt   +upstreamnt  +downstreamnt
cccagcccgcagcccgccggggccatccggcccatcgaccgccggtctgtccatcgcatc
tgctcggggcaggtcgtgctgaacctcggcactgccgtgaaagagctggtggagaacagc
ctggatgccggagctaccaacatcgatataaaacttaaagatcatggggcagagctgata
gaagtttcagataatggaggtggagtggaagaggaaaactttgaaggcttgactctgaaa
cattacacatcaaagatacaagatttttctgatctaatacatgttgaaacatttgggttt
cgaggtgaagctttgagttcactgtgtgcattaagtgatgttaccattttcacctgtcat
aagtcagcaaaggttgggactcgtttggtgtttgatcacaatggcagaattactcagagg
actcctttcccacggcagcagggaaccactgtcagcatccagcagttgttttatacctta
ccagtgcggcataaagagttccaaaggaacatcaaaaaggaatatgcaaaaatggtccag
ctgttgcaggcctactgtattgtttccaaaggagtgcggattaactgcactaatcaaatt
ggccaggggaaaaaaagctgtgtgatatccactgctggaagtcccagtttaaaggagaac
attggagcagtatttggacaaaaacagttgcagagccttattccttttgttcagcttcct
cctagtgaagctgtttgtgaagaatatggactcaaccctgctgacatgccacagaatctt
tatagtattggtggcttcatttcccgttgtgatcacggtgttggaaggagcacgacagac
agacagttcttctttatcaaccaacggccctgtgatccagccaaggttgtcaaaattgtg
aatgaagtttatcacttacacaataaacaccagtatccatttgttgtccttaacattggg
gtagattctgagtgtgttgacatcaatgtaactcctgacaaaaggcagattttacttcag
gaggaaaagtttttattagcaattctaaagacttctctgatggagatgtttggtagtgat
gttaacaaactggatgtcaatcagaaacttctggatcttgcaggtaacttgaagaagaca
cttcctgaaaaggcagaaaagcctcaggcagacatgctgtctgactctgagactgaaagt
ccaggtggtgaaggcaaaagaacaatgactcttgccagattaagggagtcattctctctc
catcaagcaacagaaagtgactttcaaagctctaaaaaggtaaaacagcagcacagttcc
cctagacaaaggttactcgataccactgggggtactgtaaagattcaaaaggctgtcttg
actaagaaggctgaaagttgtcataaattggactcaaaggtgtcaattccaaggagacac
ttgagaaaattagaagatgcttcagattctggattctgtagtatttctgagtcagatgct
ggatgtagcacaccagaagctggaagctgcatcaatagtgaaagtgcaattaattctgag
gaagaattctgtagcacagaagaacagatgcagaaggagtgtcttaaaactgctggatgc
agtaagaaatcattggactgtgatgttcaggtcttgggcactgaacccgagctagatcaa
gtgaatgactgggctgatcagaacaagttttctcaagaaggaaatagttgttctccaaga
gtaaaacgttttaaaagcagaaagtttaaaactgaagcagatgattctaaggcaagtaaa
tatcctgaagaaaagaacactagtgttgatgtgctggtggaagttaaaaagaaaattgtg
cctcttgaattctctatgaaggttttggcagaaaaagtaaaaaaggtaatacagcaacaa
cagaaaaatacagaaactgaaaattacagaagatttaaagcaaaaattagtcctggggac
aacaaagtagcagaagatgaattaaggaaagagatcagtaaagaaatgtttgcaaaaatg
gaaatcattggccagttcaatttagggtttataatagcaaagttgaattctgatcttttc
ataattgatcaacatgctactgatgagaaatacaactttgagatgttgcaacaacacact
gttctccaaggtcagaagctgatagtgcctcaaaatctcaatttaacagcagtaaatgaa
actgtattgattgaaaacctggaagtattcagaaaaaatggctttgattttgtcataaat
gaaaatgctcctgtaactcaaagagttaaattggtatcattgccaacaagcaaaaactgg
acttttgggccacaagacatagatgagctgattttcatgttgagtgactaccctggagtg
atgtgcaggccctccagggtcaggcagatgtttgcttctcgagcttgcaggaagtctgtg
atgattggaactgcactgaatgtgcaggaaatgagaaaactgatcacccacatgggtgag
attgagcatccctggaactgcccccatggaaggcctactatgagacacatagtcagtttg
gacttgatttcaccacaataa

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