Geospiza fortis (medium ground-finch): 102034693
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Entry
102034693 CDS
T03755
Symbol
LSM7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03018
RNA degradation
gfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102034693 (LSM7)
09123 Folding, sorting and degradation
03018 RNA degradation
102034693 (LSM7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102034693 (LSM7)
03041 Spliceosome [BR:
gfr03041
]
102034693 (LSM7)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102034693 (LSM7)
mRNA degradation factors
5'-3' decay
Lsm complex
102034693 (LSM7)
Spliceosome [BR:
gfr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102034693 (LSM7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
102034693
NCBI-ProteinID:
XP_005427373
UniProt:
A0A6I9HPD6
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Position
Un
AA seq
103 aa
AA seq
DB search
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaggagaagaagaagaaggagagcatcttggacctctccaagtacattgac
aagaccatccgggtgaagttccagggcgggcgggaagcaagtggtgtcttgaaaggattt
gaccctcttctgaaccttgtgctggatggtaccattgagtatatgcgagatccggatgat
caatttaaattaacagaagacacacgtcagctgggacttgtggtttgcagagggacttct
gtggttctgatttgtccacaggatggaatggaagctattccaaaccctttcattcagcag
caggatggttaa
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integrated database retrieval system
